PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22851-22900 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 36.1290 | 77.7778 | 23.5294 | 96.8105 | 7 | 2 | 4 | 13 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 29.7030 | 71.4286 | 18.7500 | 96.3218 | 5 | 2 | 3 | 13 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e0 | homalt | 96.5678 | 93.8198 | 99.4817 | 88.0057 | 2520 | 166 | 2495 | 13 | 9 | 69.2308 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e1 | homalt | 96.5507 | 93.7822 | 99.4876 | 88.0830 | 2549 | 169 | 2524 | 13 | 9 | 69.2308 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e0 | het | 90.2778 | 98.4848 | 83.3333 | 97.8793 | 65 | 1 | 65 | 13 | 3 | 23.0769 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e1 | het | 90.2778 | 98.4848 | 83.3333 | 97.9517 | 65 | 1 | 65 | 13 | 3 | 23.0769 | |
| ghariani-varprowl | SNP | ti | map_l150_m1_e0 | homalt | 98.9885 | 98.1711 | 99.8196 | 71.5110 | 7193 | 134 | 7193 | 13 | 10 | 76.9231 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e0 | homalt | 99.0272 | 98.2405 | 99.8266 | 73.7644 | 7482 | 134 | 7482 | 13 | 10 | 76.9231 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e1 | homalt | 99.0304 | 98.2452 | 99.8283 | 73.7883 | 7558 | 135 | 7558 | 13 | 10 | 76.9231 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 83.8710 | 95.1220 | 75.0000 | 93.0667 | 39 | 2 | 39 | 13 | 10 | 76.9231 | |
| hfeng-pmm1 | INDEL | * | * | hetalt | 96.9096 | 94.0524 | 99.9458 | 58.8135 | 23736 | 1501 | 23960 | 13 | 12 | 92.3077 | |
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | het | 96.9158 | 95.4386 | 98.4394 | 87.9118 | 816 | 39 | 820 | 13 | 1 | 7.6923 | |
| gduggal-snapfb | INDEL | I6_15 | segdup | * | 85.8304 | 80.5714 | 91.8239 | 87.1255 | 141 | 34 | 146 | 13 | 13 | 100.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.5691 | 99.7274 | 99.4112 | 46.0147 | 2195 | 6 | 2195 | 13 | 6 | 46.1538 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e1 | homalt | 95.8740 | 93.3404 | 98.5491 | 93.5115 | 883 | 63 | 883 | 13 | 5 | 38.4615 | |
| gduggal-snapplat | INDEL | * | map_l150_m1_e0 | homalt | 82.5287 | 72.0779 | 96.5241 | 92.1114 | 333 | 129 | 361 | 13 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | tech_badpromoters | het | 34.2146 | 28.2051 | 43.4783 | 84.7682 | 11 | 28 | 10 | 13 | 1 | 7.6923 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | homalt | 96.2308 | 92.8014 | 99.9235 | 62.6446 | 16991 | 1318 | 16974 | 13 | 13 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e1 | homalt | 96.2554 | 92.8463 | 99.9243 | 62.6415 | 17171 | 1323 | 17154 | 13 | 13 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_siren | homalt | 96.8214 | 93.9095 | 99.9197 | 58.2133 | 16190 | 1050 | 16181 | 13 | 5 | 38.4615 | |
| gduggal-snapvard | INDEL | * | map_l100_m0_e0 | homalt | 91.5445 | 85.8546 | 98.0422 | 79.7808 | 437 | 72 | 651 | 13 | 9 | 69.2308 | |
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | homalt | 92.3976 | 87.0219 | 98.4813 | 80.4522 | 637 | 95 | 843 | 13 | 11 | 84.6154 | |
| gduggal-snapvard | INDEL | * | map_l125_m2_e0 | homalt | 92.4285 | 87.0249 | 98.5475 | 81.2093 | 664 | 99 | 882 | 13 | 11 | 84.6154 | |
| gduggal-snapvard | INDEL | * | map_l125_m2_e1 | homalt | 92.3972 | 86.9509 | 98.5714 | 81.2719 | 673 | 101 | 897 | 13 | 11 | 84.6154 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 13.3333 | 83.5165 | 0 | 0 | 2 | 13 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 13.3333 | 82.7586 | 0 | 0 | 2 | 13 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 62.8571 | 79.8851 | 0 | 0 | 22 | 13 | 2 | 15.3846 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 59.3750 | 80.0000 | 0 | 0 | 19 | 13 | 2 | 15.3846 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.0693 | 99.0805 | 97.0787 | 69.6866 | 431 | 4 | 432 | 13 | 7 | 53.8462 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m1_e0 | * | 98.1894 | 98.1869 | 98.1919 | 88.2765 | 704 | 13 | 706 | 13 | 6 | 46.1538 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e0 | * | 98.2984 | 98.2962 | 98.3007 | 88.8468 | 750 | 13 | 752 | 13 | 6 | 46.1538 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e1 | * | 94.8905 | 94.5455 | 95.2381 | 86.0143 | 260 | 15 | 260 | 13 | 7 | 53.8462 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 88.3660 | 81.6425 | 96.2963 | 68.1777 | 338 | 76 | 338 | 13 | 13 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.2050 | 96.4561 | 97.9656 | 65.7923 | 626 | 23 | 626 | 13 | 12 | 92.3077 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m1_e0 | * | 98.6138 | 98.2076 | 99.0233 | 82.7345 | 1315 | 24 | 1318 | 13 | 6 | 46.1538 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.8557 | 91.6364 | 98.3095 | 69.4841 | 756 | 69 | 756 | 13 | 13 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 94.8557 | 91.6364 | 98.3095 | 69.4841 | 756 | 69 | 756 | 13 | 13 | 100.0000 | |
| rpoplin-dv42 | SNP | * | func_cds | * | 99.9366 | 99.9449 | 99.9284 | 24.7263 | 18140 | 10 | 18137 | 13 | 3 | 23.0769 | |
| rpoplin-dv42 | SNP | * | func_cds | het | 99.9149 | 99.9462 | 99.8836 | 25.6262 | 11155 | 6 | 11152 | 13 | 3 | 23.0769 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8741 | 99.9407 | 99.8075 | 37.7626 | 6741 | 4 | 6741 | 13 | 5 | 38.4615 | |
| rpoplin-dv42 | SNP | * | map_l250_m2_e1 | homalt | 98.7018 | 97.9029 | 99.5138 | 87.8305 | 2661 | 57 | 2661 | 13 | 13 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l150_m0_e0 | homalt | 98.9435 | 98.3702 | 99.5236 | 74.2304 | 2716 | 45 | 2716 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.1070 | 95.3734 | 98.9048 | 56.9460 | 1175 | 57 | 1174 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m1_e0 | het | 97.8601 | 97.5207 | 98.2019 | 84.3405 | 708 | 18 | 710 | 13 | 2 | 15.3846 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e0 | het | 97.9668 | 97.6440 | 98.2917 | 85.0197 | 746 | 18 | 748 | 13 | 2 | 15.3846 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e1 | het | 97.9827 | 97.6623 | 98.3051 | 85.1328 | 752 | 18 | 754 | 13 | 2 | 15.3846 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e1 | * | 97.8058 | 97.3008 | 98.3161 | 87.6421 | 757 | 21 | 759 | 13 | 4 | 30.7692 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | * | 97.8362 | 96.7150 | 98.9836 | 65.6644 | 1266 | 43 | 1266 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.7383 | 91.7031 | 97.9814 | 80.1296 | 630 | 57 | 631 | 13 | 8 | 61.5385 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.5349 | 93.9024 | 85.5556 | 75.6098 | 77 | 5 | 77 | 13 | 13 | 100.0000 | |