PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22401-22450 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 87.8711 | 79.8639 | 97.6628 | 43.9139 | 587 | 148 | 585 | 14 | 14 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.9813 | 98.1884 | 99.7871 | 45.7254 | 6558 | 121 | 6563 | 14 | 11 | 78.5714 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e0 | * | 98.0973 | 96.9713 | 99.2497 | 77.4882 | 1857 | 58 | 1852 | 14 | 2 | 14.2857 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e1 | het | 97.9674 | 97.0820 | 98.8691 | 75.9144 | 1231 | 37 | 1224 | 14 | 1 | 7.1429 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 90.0602 | 82.8959 | 98.5801 | 34.3105 | 979 | 202 | 972 | 14 | 13 | 92.8571 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 89.1830 | 82.6962 | 96.7742 | 67.5635 | 411 | 86 | 420 | 14 | 13 | 92.8571 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | hetalt | 98.0883 | 96.9293 | 99.2754 | 77.2008 | 1673 | 53 | 1918 | 14 | 14 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.2500 | 97.3962 | 99.1189 | 63.9192 | 1571 | 42 | 1575 | 14 | 1 | 7.1429 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e1 | * | 98.0445 | 97.1326 | 98.9736 | 79.7926 | 1355 | 40 | 1350 | 14 | 2 | 14.2857 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.3982 | 97.2756 | 99.5471 | 54.5040 | 3035 | 85 | 3077 | 14 | 13 | 92.8571 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8311 | 99.7438 | 99.9184 | 52.5299 | 17133 | 44 | 17145 | 14 | 9 | 64.2857 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8014 | 99.7293 | 99.8736 | 52.3918 | 11054 | 30 | 11063 | 14 | 9 | 64.2857 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.4803 | 98.6631 | 96.3255 | 58.8553 | 369 | 5 | 367 | 14 | 8 | 57.1429 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.9356 | 91.3534 | 94.5736 | 81.3987 | 243 | 23 | 244 | 14 | 11 | 78.5714 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 73.2143 | 71.9298 | 74.5455 | 99.3650 | 41 | 16 | 41 | 14 | 6 | 42.8571 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 85.3128 | 76.1578 | 96.9697 | 63.3042 | 444 | 139 | 448 | 14 | 11 | 78.5714 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 85.9606 | 75.6948 | 99.4477 | 36.9246 | 2669 | 857 | 2521 | 14 | 12 | 85.7143 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 85.9606 | 75.6948 | 99.4477 | 36.9246 | 2669 | 857 | 2521 | 14 | 12 | 85.7143 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5189 | 99.8302 | 99.2095 | 64.3231 | 1764 | 3 | 1757 | 14 | 7 | 50.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 77.5681 | 83.3333 | 72.5490 | 91.3413 | 35 | 7 | 37 | 14 | 7 | 50.0000 | |
| qzeng-custom | SNP | tv | map_l150_m0_e0 | homalt | 77.7789 | 64.3072 | 98.3908 | 80.7905 | 854 | 474 | 856 | 14 | 14 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | * | 81.0503 | 79.0698 | 83.1325 | 85.7143 | 68 | 18 | 69 | 14 | 10 | 71.4286 | |
| ndellapenna-hhga | SNP | * | map_l125_m1_e0 | homalt | 99.7333 | 99.5504 | 99.9169 | 65.2026 | 16829 | 76 | 16829 | 14 | 13 | 92.8571 | |
| ndellapenna-hhga | SNP | * | map_l125_m2_e0 | homalt | 99.7405 | 99.5626 | 99.9191 | 67.9668 | 17299 | 76 | 17299 | 14 | 13 | 92.8571 | |
| ndellapenna-hhga | SNP | * | map_l125_m2_e1 | homalt | 99.7429 | 99.5665 | 99.9199 | 68.0072 | 17456 | 76 | 17456 | 14 | 13 | 92.8571 | |
| ndellapenna-hhga | SNP | * | map_l250_m0_e0 | het | 96.7742 | 94.6215 | 99.0271 | 92.2359 | 1425 | 81 | 1425 | 14 | 5 | 35.7143 | |
| ndellapenna-hhga | SNP | ti | map_l250_m1_e0 | het | 97.6313 | 95.8221 | 99.5101 | 88.0937 | 2844 | 124 | 2844 | 14 | 6 | 42.8571 | |
| ndellapenna-hhga | SNP | ti | map_l250_m2_e0 | het | 97.7952 | 96.0971 | 99.5543 | 88.3585 | 3127 | 127 | 3127 | 14 | 6 | 42.8571 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.9147 | 98.8772 | 98.9521 | 56.9032 | 1321 | 15 | 1322 | 14 | 5 | 35.7143 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7292 | 99.5876 | 99.8713 | 60.0265 | 10866 | 45 | 10866 | 14 | 10 | 71.4286 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2827 | 98.8697 | 99.6991 | 37.4429 | 4636 | 53 | 4639 | 14 | 4 | 28.5714 | |
| qzeng-custom | INDEL | * | map_l150_m1_e0 | homalt | 80.5851 | 69.0476 | 96.7517 | 89.5717 | 319 | 143 | 417 | 14 | 7 | 50.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 34.7826 | 80.0000 | 22.2222 | 97.4755 | 4 | 1 | 4 | 14 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | het | 66.4395 | 92.8571 | 51.7241 | 96.7232 | 13 | 1 | 15 | 14 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m2_e0 | het | 70.3125 | 93.7500 | 56.2500 | 96.6066 | 15 | 1 | 18 | 14 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.6752 | 98.9651 | 98.3871 | 77.1459 | 765 | 8 | 854 | 14 | 3 | 21.4286 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 99.9713 | 0 | 0 | 0 | 14 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.2635 | 98.1273 | 98.4000 | 38.2934 | 262 | 5 | 861 | 14 | 8 | 57.1429 | |
| qzeng-custom | INDEL | I6_15 | func_cds | het | 77.4194 | 100.0000 | 63.1579 | 33.3333 | 24 | 0 | 24 | 14 | 2 | 14.2857 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | homalt | 64.7619 | 59.6491 | 70.8333 | 88.7324 | 34 | 23 | 34 | 14 | 14 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | homalt | 66.6667 | 61.6667 | 72.5490 | 90.0391 | 37 | 23 | 37 | 14 | 14 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e1 | homalt | 66.6667 | 61.6667 | 72.5490 | 90.4315 | 37 | 23 | 37 | 14 | 14 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | * | 67.7170 | 59.7561 | 78.1250 | 86.7769 | 49 | 33 | 50 | 14 | 10 | 71.4286 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | * | 68.1223 | 60.0000 | 78.7879 | 86.7735 | 51 | 34 | 52 | 14 | 10 | 71.4286 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.0318 | 94.2197 | 95.8580 | 61.6780 | 326 | 20 | 324 | 14 | 10 | 71.4286 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 81.6561 | 69.2510 | 99.4755 | 31.4587 | 2635 | 1170 | 2655 | 14 | 14 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 75.4098 | 95.8333 | 62.1622 | 79.5580 | 23 | 1 | 23 | 14 | 14 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2146 | 96.7797 | 99.6928 | 37.8817 | 4538 | 151 | 4543 | 14 | 2 | 14.2857 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.0340 | 96.7727 | 99.3285 | 36.5490 | 2069 | 69 | 2071 | 14 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.7388 | 98.0035 | 99.4851 | 62.3094 | 1669 | 34 | 2705 | 14 | 11 | 78.5714 | |