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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
22301-22350 / 86044 show all
hfeng-pmm1INDEL*map_l150_m2_e1het
96.9264
95.4545
98.4444
88.8199
88242886141
7.1429
hfeng-pmm1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
92.8663
91.3194
94.4664
79.0041
26325239148
57.1429
hfeng-pmm2INDELD16_PLUSmap_l100_m1_e0*
88.3978
91.9540
85.1064
93.2713
80780143
21.4286
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8164
99.6885
99.9447
54.6733
2528079252811410
71.4286
hfeng-pmm2INDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.5157
97.8799
95.1890
68.7433
27762771414
100.0000
hfeng-pmm2INDELI1_5map_l100_m1_e0*
98.8805
98.8051
98.9560
83.1786
1323161327144
28.5714
hfeng-pmm2INDELI1_5map_l100_m2_e0*
98.9042
98.8304
98.9781
84.3732
1352161356144
28.5714
hfeng-pmm2INDELI1_5map_l100_m2_e1*
98.9254
98.8530
98.9979
84.4605
1379161383144
28.5714
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
96.1440
99.4681
93.0348
67.3701
18711871413
92.8571
hfeng-pmm2INDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
97.0727
94.8590
99.3921
62.0781
22881242289148
57.1429
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
89.7059
100.0000
81.3333
90.5779
610611413
92.8571
jlack-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
98.5965
99.6454
97.5694
72.5584
56225621413
92.8571
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.3732
96.7655
97.9885
73.3129
71824682149
64.2857
jlack-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8935
99.8564
99.9306
55.5702
2017029201701413
92.8571
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7138
100.0000
99.4293
53.4182
243902439140
0.0000
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5589
100.0000
99.1217
56.3407
158001580140
0.0000
jlack-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7419
99.8278
99.6562
49.2016
405874058140
0.0000
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.3529
98.9842
99.7244
73.0843
5067525065147
50.0000
hfeng-pmm3INDELD1_5map_l100_m1_e0*
99.0792
98.9177
99.2412
80.6907
1828201831143
21.4286
hfeng-pmm3INDELD1_5map_l100_m2_e0*
99.0853
98.9034
99.2678
81.4098
1894211898143
21.4286
hfeng-pmm3INDELD1_5map_l100_m2_e1*
99.0966
98.9170
99.2769
81.5232
1918211922143
21.4286
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.5999
99.7890
99.4115
47.4486
2365523651413
92.8571
hfeng-pmm3INDELI16_PLUS*het
98.6061
97.7557
99.4715
72.8336
2657612635143
21.4286
hfeng-pmm3INDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.2888
95.8808
98.7387
78.3161
10944710961411
78.5714
hfeng-pmm3SNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
98.6531
97.6280
99.6999
67.5388
46511134651141
7.1429
hfeng-pmm3SNPtimap_l125_m0_e0homalt
99.6659
99.6437
99.6881
69.8765
4475164475145
35.7143
hfeng-pmm3SNPtvHG002compoundhet*
97.0510
94.4189
99.8341
47.0669
84254988423147
50.0000
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5496
99.5667
99.5326
76.5043
2987132981144
28.5714
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
93.8234
88.7991
99.4503
37.7718
241830525331413
92.8571
dgrover-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.8508
99.7870
99.9147
58.6642
163943516393144
28.5714
dgrover-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9204
99.9646
99.8762
56.3643
112924112921413
92.8571
dgrover-gatkINDEL*map_l100_m2_e0homalt
99.0099
99.1277
98.8924
84.9649
1250111250146
42.8571
dgrover-gatkINDEL*map_l100_m2_e1homalt
99.0253
99.1413
98.9097
85.0193
1270111270146
42.8571
dgrover-gatkINDELD16_PLUS*hetalt
96.8869
94.5680
99.3224
39.0920
182810520521414
100.0000
dgrover-gatkINDELD16_PLUSHG002complexvarhetalt
93.7238
90.6883
96.9697
48.0899
224234481414
100.0000
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.9108
94.6142
99.3217
39.0251
182710420501414
100.0000
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.2903
98.1771
96.4194
86.0507
3777377142
14.2857
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.9108
94.6142
99.3217
39.0251
182710420501414
100.0000
dgrover-gatkINDELD1_5HG002complexvarhomalt
99.8963
99.9245
99.8680
60.1555
105908105951412
85.7143
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
98.0772
97.3214
98.8449
61.5726
11993311981412
85.7143
dgrover-gatkINDELD1_5map_l150_m1_e0*
98.1921
98.3264
98.0583
89.8594
70512707143
21.4286
dgrover-gatkINDELD1_5map_l150_m2_e0*
98.3008
98.4273
98.1747
90.2973
75112753143
21.4286
dgrover-gatkINDELD6_15HG002complexvarhomalt
99.4048
100.0000
98.8166
62.8338
1169011691414
100.0000
ckim-isaacSNP*segdup*
98.2480
96.6046
99.9484
87.4705
2711495327116147
50.0000
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
98.3003
96.8730
99.7704
41.9223
607219660831411
78.5714
ckim-isaacSNPtimap_l250_m2_e0*
66.8081
50.2995
99.4473
90.8038
251924892519143
21.4286
ckim-isaacSNPtimap_l250_m2_e1*
66.8585
50.3546
99.4553
90.8557
255625202556143
21.4286
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
96.8288
94.8353
98.9080
47.7162
1267691268147
50.0000
ckim-vqsrINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9026
99.9292
99.8761
56.3916
112888112881413
92.8571
ckim-vqsrINDELD16_PLUS*hetalt
96.6957
94.2059
99.3207
38.1824
182111220471414
100.0000