PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22251-22300 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D16_PLUS | HG002compoundhet | homalt | 53.3333 | 100.0000 | 36.3636 | 74.1176 | 8 | 0 | 8 | 14 | 14 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.4731 | 87.4402 | 98.1208 | 65.4453 | 731 | 105 | 731 | 14 | 12 | 85.7143 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.8420 | 95.3291 | 98.4036 | 71.9360 | 898 | 44 | 863 | 14 | 8 | 57.1429 | |
| raldana-dualsentieon | SNP | * | HG002compoundhet | het | 95.9874 | 92.3755 | 99.8932 | 43.8424 | 13097 | 1081 | 13096 | 14 | 7 | 50.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.2989 | 98.9290 | 99.6716 | 45.6458 | 4249 | 46 | 4249 | 14 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.9332 | 98.3991 | 99.4731 | 46.9555 | 2643 | 43 | 2643 | 14 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.0134 | 85.8844 | 99.0844 | 88.5511 | 1515 | 249 | 1515 | 14 | 9 | 64.2857 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.5465 | 99.6219 | 99.4711 | 83.1776 | 2635 | 10 | 2633 | 14 | 8 | 57.1429 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.8457 | 99.8792 | 99.8121 | 39.2368 | 7443 | 9 | 7438 | 14 | 3 | 21.4286 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.0971 | 98.0315 | 98.1627 | 67.6020 | 747 | 15 | 748 | 14 | 7 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m1_e0 | het | 98.0040 | 97.9339 | 98.0743 | 85.2983 | 711 | 15 | 713 | 14 | 3 | 21.4286 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e0 | het | 98.1032 | 98.0366 | 98.1699 | 85.9427 | 749 | 15 | 751 | 14 | 3 | 21.4286 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e1 | het | 98.1180 | 98.0519 | 98.1842 | 86.0452 | 755 | 15 | 757 | 14 | 3 | 21.4286 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e1 | * | 98.2028 | 98.2005 | 98.2051 | 88.8460 | 764 | 14 | 766 | 14 | 7 | 50.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.0666 | 85.7988 | 99.3224 | 30.2027 | 2030 | 336 | 2052 | 14 | 14 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.0325 | 97.2835 | 98.7931 | 73.7259 | 1146 | 32 | 1146 | 14 | 13 | 92.8571 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | * | 98.5327 | 98.0994 | 98.9698 | 83.9986 | 1342 | 26 | 1345 | 14 | 7 | 50.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.9089 | 82.5503 | 89.5522 | 75.5027 | 123 | 26 | 120 | 14 | 12 | 85.7143 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7936 | 99.6701 | 99.9173 | 72.0908 | 16919 | 56 | 16921 | 14 | 4 | 28.5714 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7936 | 99.6701 | 99.9173 | 72.0908 | 16919 | 56 | 16921 | 14 | 4 | 28.5714 | |
| hfeng-pmm2 | SNP | tv | HG002compoundhet | * | 96.9561 | 94.2396 | 99.8337 | 46.6519 | 8409 | 514 | 8407 | 14 | 7 | 50.0000 | |
| hfeng-pmm2 | SNP | tv | map_l100_m1_e0 | homalt | 99.8507 | 99.8562 | 99.8452 | 62.5538 | 9030 | 13 | 9030 | 14 | 5 | 35.7143 | |
| hfeng-pmm2 | SNP | tv | map_l100_m2_e0 | homalt | 99.8535 | 99.8589 | 99.8481 | 64.9206 | 9201 | 13 | 9201 | 14 | 5 | 35.7143 | |
| hfeng-pmm2 | SNP | tv | map_l100_m2_e1 | homalt | 99.8549 | 99.8602 | 99.8495 | 64.9261 | 9289 | 13 | 9289 | 14 | 5 | 35.7143 | |
| hfeng-pmm2 | SNP | tv | map_l125_m1_e0 | homalt | 99.7782 | 99.7952 | 99.7612 | 67.4839 | 5848 | 12 | 5848 | 14 | 5 | 35.7143 | |
| hfeng-pmm2 | SNP | tv | map_l125_m2_e0 | homalt | 99.7840 | 99.8006 | 99.7674 | 69.8673 | 6005 | 12 | 6005 | 14 | 5 | 35.7143 | |
| hfeng-pmm2 | SNP | tv | map_l125_m2_e1 | homalt | 99.7860 | 99.8024 | 99.7696 | 69.9104 | 6062 | 12 | 6062 | 14 | 5 | 35.7143 | |
| hfeng-pmm3 | INDEL | * | map_l125_m0_e0 | het | 97.7062 | 97.7853 | 97.6271 | 88.4968 | 574 | 13 | 576 | 14 | 2 | 14.2857 | |
| hfeng-pmm3 | INDEL | * | map_l250_m1_e0 | * | 96.4286 | 97.3770 | 95.4984 | 94.9050 | 297 | 8 | 297 | 14 | 4 | 28.5714 | |
| hfeng-pmm3 | INDEL | * | map_l250_m2_e0 | * | 96.7066 | 97.5831 | 95.8457 | 95.1946 | 323 | 8 | 323 | 14 | 4 | 28.5714 | |
| hfeng-pmm3 | INDEL | * | map_l250_m2_e1 | * | 96.7262 | 97.5976 | 95.8702 | 95.2904 | 325 | 8 | 325 | 14 | 4 | 28.5714 | |
| hfeng-pmm3 | INDEL | * | map_siren | homalt | 99.4733 | 99.4727 | 99.4739 | 78.7290 | 2641 | 14 | 2647 | 14 | 9 | 64.2857 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.4427 | 96.5699 | 96.3158 | 59.3148 | 366 | 13 | 366 | 14 | 14 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2017 | 98.7689 | 99.6382 | 66.9061 | 3851 | 48 | 3856 | 14 | 8 | 57.1429 | |
| hfeng-pmm1 | INDEL | I1_5 | map_siren | * | 99.1319 | 98.7354 | 99.5316 | 79.6028 | 2967 | 38 | 2975 | 14 | 4 | 28.5714 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.8121 | 88.0383 | 98.1333 | 66.6073 | 736 | 100 | 736 | 14 | 12 | 85.7143 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.8763 | 98.9362 | 93.0000 | 65.6947 | 186 | 2 | 186 | 14 | 13 | 92.8571 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1748 | 95.9660 | 98.4145 | 72.9224 | 904 | 38 | 869 | 14 | 8 | 57.1429 | |
| hfeng-pmm1 | SNP | ti | map_l125_m0_e0 | homalt | 99.6547 | 99.6215 | 99.6881 | 70.0040 | 4474 | 17 | 4474 | 14 | 5 | 35.7143 | |
| hfeng-pmm2 | INDEL | * | * | hetalt | 96.9055 | 94.0484 | 99.9416 | 58.8044 | 23735 | 1502 | 23954 | 14 | 12 | 85.7143 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.5772 | 99.8940 | 99.2624 | 72.0923 | 1884 | 2 | 1884 | 14 | 11 | 78.5714 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 88.3435 | 79.5079 | 99.3884 | 37.9338 | 2165 | 558 | 2275 | 14 | 13 | 92.8571 | |
| jlack-gatk | INDEL | * | map_l100_m1_e0 | homalt | 98.7765 | 98.6960 | 98.8571 | 82.9030 | 1211 | 16 | 1211 | 14 | 6 | 42.8571 | |
| jlack-gatk | INDEL | * | map_l100_m2_e0 | homalt | 98.7694 | 98.6519 | 98.8871 | 83.9295 | 1244 | 17 | 1244 | 14 | 6 | 42.8571 | |
| jlack-gatk | INDEL | D16_PLUS | HG002complexvar | hetalt | 92.3729 | 88.2591 | 96.8889 | 46.8085 | 218 | 29 | 436 | 14 | 14 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.8912 | 97.3958 | 96.3918 | 85.9420 | 374 | 10 | 374 | 14 | 3 | 21.4286 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 94.5501 | 90.3525 | 99.1566 | 32.4379 | 1461 | 156 | 1646 | 14 | 14 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.1185 | 98.1869 | 98.0501 | 57.4392 | 704 | 13 | 704 | 14 | 12 | 85.7143 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.4937 | 90.2365 | 99.1726 | 34.9981 | 1488 | 161 | 1678 | 14 | 14 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e1 | * | 92.0152 | 94.5312 | 89.6296 | 92.3164 | 121 | 7 | 121 | 14 | 2 | 14.2857 | |