PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22201-22250 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | * | 97.8142 | 97.4308 | 98.2005 | 87.3865 | 493 | 13 | 764 | 14 | 8 | 57.1429 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | het | 97.0200 | 96.4684 | 97.5779 | 93.5180 | 519 | 19 | 564 | 14 | 8 | 57.1429 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m1_e0 | homalt | 77.9540 | 75.7576 | 80.2817 | 77.2436 | 25 | 8 | 57 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e0 | homalt | 78.0829 | 75.7576 | 80.5556 | 78.2477 | 25 | 8 | 58 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | segdup | homalt | 82.6923 | 91.4894 | 75.4386 | 87.6356 | 43 | 4 | 43 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7839 | 99.8029 | 99.7650 | 51.9403 | 6076 | 12 | 5943 | 14 | 7 | 50.0000 | |
| eyeh-varpipe | SNP | * | segdup | homalt | 99.9005 | 99.9348 | 99.8662 | 89.0870 | 10736 | 7 | 10453 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | SNP | ti | HG002complexvar | hetalt | 99.6433 | 99.5169 | 99.7701 | 22.0458 | 206 | 1 | 6075 | 14 | 13 | 92.8571 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 41.6667 | 100.0000 | 26.3158 | 76.2500 | 6 | 0 | 5 | 14 | 4 | 28.5714 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 91.1195 | 84.5528 | 98.7921 | 74.4432 | 1144 | 209 | 1145 | 14 | 13 | 92.8571 | |
| gduggal-bwafb | INDEL | * | map_l100_m1_e0 | homalt | 98.5277 | 98.2070 | 98.8506 | 84.0137 | 1205 | 22 | 1204 | 14 | 12 | 85.7143 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e0 | homalt | 98.5676 | 98.2554 | 98.8818 | 84.8792 | 1239 | 22 | 1238 | 14 | 12 | 85.7143 | |
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | het | 95.7648 | 94.0375 | 97.5567 | 88.0025 | 552 | 35 | 559 | 14 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m0_e0 | * | 65.7143 | 69.6970 | 62.1622 | 90.1857 | 23 | 10 | 23 | 14 | 7 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m0_e0 | het | 68.0851 | 94.1176 | 53.3333 | 91.3295 | 16 | 1 | 16 | 14 | 7 | 50.0000 | |
| gduggal-bwavard | SNP | * | map_l150_m0_e0 | homalt | 98.1354 | 96.6740 | 99.6417 | 77.0204 | 3953 | 136 | 3893 | 14 | 10 | 71.4286 | |
| gduggal-bwavard | SNP | ti | map_l100_m0_e0 | homalt | 98.3810 | 96.9900 | 99.8126 | 63.0879 | 7540 | 234 | 7457 | 14 | 11 | 78.5714 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.4306 | 91.4992 | 99.7150 | 67.7457 | 4962 | 461 | 4898 | 14 | 5 | 35.7143 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.4306 | 91.4992 | 99.7150 | 67.7457 | 4962 | 461 | 4898 | 14 | 5 | 35.7143 | |
| gduggal-snapfb | INDEL | * | map_l100_m0_e0 | homalt | 95.6116 | 94.1061 | 97.1660 | 88.8033 | 479 | 30 | 480 | 14 | 7 | 50.0000 | |
| gduggal-snapfb | INDEL | * | map_l125_m1_e0 | homalt | 96.9613 | 95.9016 | 98.0447 | 89.0553 | 702 | 30 | 702 | 14 | 9 | 64.2857 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e0 | homalt | 97.0861 | 96.0682 | 98.1258 | 89.6192 | 733 | 30 | 733 | 14 | 9 | 64.2857 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e1 | homalt | 97.1279 | 96.1240 | 98.1530 | 89.6772 | 744 | 30 | 744 | 14 | 9 | 64.2857 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 33.3333 | 96.7593 | 0 | 0 | 7 | 14 | 5 | 35.7143 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 59.5561 | 42.5651 | 99.1245 | 51.1308 | 1603 | 2163 | 1585 | 14 | 12 | 85.7143 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 59.5561 | 42.5651 | 99.1245 | 51.1308 | 1603 | 2163 | 1585 | 14 | 12 | 85.7143 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m1_e0 | * | 80.6885 | 80.8219 | 80.5556 | 93.5252 | 59 | 14 | 58 | 14 | 10 | 71.4286 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m1_e0 | het | 84.7826 | 100.0000 | 73.5849 | 94.5697 | 39 | 0 | 39 | 14 | 10 | 71.4286 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e0 | * | 82.8213 | 82.9268 | 82.7160 | 93.4835 | 68 | 14 | 67 | 14 | 10 | 71.4286 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e0 | het | 86.7925 | 100.0000 | 76.6667 | 94.4954 | 46 | 0 | 46 | 14 | 10 | 71.4286 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 66.6667 | 93.7500 | 51.7241 | 86.8778 | 15 | 1 | 15 | 14 | 5 | 35.7143 | |
| gduggal-bwafb | INDEL | I1_5 | map_siren | homalt | 98.9302 | 99.0099 | 98.8506 | 78.8211 | 1200 | 12 | 1204 | 14 | 8 | 57.1429 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 84.1131 | 77.3148 | 92.2222 | 50.6849 | 167 | 49 | 166 | 14 | 14 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.9805 | 99.1013 | 98.8599 | 68.0375 | 1213 | 11 | 1214 | 14 | 8 | 57.1429 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e0 | het | 84.9116 | 74.6019 | 98.5279 | 92.8459 | 937 | 319 | 937 | 14 | 5 | 35.7143 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | het | 84.9192 | 74.6057 | 98.5417 | 92.9073 | 946 | 322 | 946 | 14 | 5 | 35.7143 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 53.3937 | 39.8649 | 80.8219 | 88.1107 | 59 | 89 | 59 | 14 | 7 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_siren | * | 85.1433 | 74.4759 | 99.3775 | 89.0629 | 2238 | 767 | 2235 | 14 | 8 | 57.1429 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 72.7768 | 59.8071 | 92.9293 | 81.5471 | 186 | 125 | 184 | 14 | 12 | 85.7143 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5902 | 93.7269 | 99.6340 | 52.3424 | 3810 | 255 | 3811 | 14 | 3 | 21.4286 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 91.9813 | 85.4583 | 99.5823 | 47.6985 | 3338 | 568 | 3338 | 14 | 1 | 7.1429 | |
| gduggal-bwaplat | SNP | tv | map_l125_m0_e0 | * | 61.5481 | 44.5483 | 99.5283 | 92.9610 | 2954 | 3677 | 2954 | 14 | 5 | 35.7143 | |
| gduggal-bwaplat | SNP | tv | map_l125_m0_e0 | het | 64.9641 | 48.2618 | 99.3452 | 94.0434 | 2124 | 2277 | 2124 | 14 | 5 | 35.7143 | |
| raldana-dualsentieon | SNP | ti | HG002compoundhet | * | 98.2432 | 96.6243 | 99.9172 | 34.4311 | 16888 | 590 | 16889 | 14 | 10 | 71.4286 | |
| raldana-dualsentieon | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.7585 | 97.9680 | 99.5620 | 62.6286 | 3182 | 66 | 3182 | 14 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.1509 | 97.0356 | 99.2922 | 64.9042 | 1964 | 60 | 1964 | 14 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | map_siren | homalt | 99.8878 | 99.8127 | 99.9630 | 48.3820 | 37845 | 71 | 37839 | 14 | 14 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m2_e1 | homalt | 98.9071 | 98.9071 | 98.9071 | 83.4560 | 1267 | 14 | 1267 | 14 | 9 | 64.2857 | |
| rpoplin-dv42 | INDEL | * | map_l150_m1_e0 | het | 97.5275 | 96.7251 | 98.3432 | 88.8109 | 827 | 28 | 831 | 14 | 5 | 35.7143 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e0 | het | 97.6106 | 96.7991 | 98.4358 | 89.4308 | 877 | 29 | 881 | 14 | 5 | 35.7143 | |