PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21901-21950 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 6.2500 | 65.2174 | 0 | 0 | 1 | 15 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | * | tech_badpromoters | * | 78.6667 | 77.6316 | 79.7297 | 67.6856 | 59 | 17 | 59 | 15 | 15 | 100.0000 | |
| ghariani-varprowl | INDEL | * | tech_badpromoters | het | 81.3187 | 94.8718 | 71.1538 | 54.3860 | 37 | 2 | 37 | 15 | 15 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 69.5652 | 66.6667 | 72.7273 | 99.4295 | 38 | 19 | 40 | 15 | 9 | 60.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 53.6664 | 37.9233 | 91.7582 | 47.7011 | 168 | 275 | 167 | 15 | 13 | 86.6667 | |
| ckim-dragen | SNP | tv | map_l100_m1_e0 | homalt | 99.6733 | 99.5134 | 99.8336 | 57.5832 | 8999 | 44 | 8999 | 15 | 13 | 86.6667 | |
| ckim-dragen | SNP | tv | map_l100_m2_e0 | homalt | 99.6739 | 99.5116 | 99.8367 | 60.2338 | 9169 | 45 | 9169 | 15 | 13 | 86.6667 | |
| ckim-dragen | SNP | tv | map_l100_m2_e1 | homalt | 99.6770 | 99.5162 | 99.8382 | 60.2316 | 9257 | 45 | 9257 | 15 | 13 | 86.6667 | |
| ckim-dragen | SNP | tv | map_l125_m1_e0 | homalt | 99.5812 | 99.4198 | 99.7432 | 62.3307 | 5826 | 34 | 5826 | 15 | 13 | 86.6667 | |
| ckim-dragen | SNP | tv | map_l125_m2_e0 | homalt | 99.5838 | 99.4183 | 99.7499 | 65.0891 | 5982 | 35 | 5982 | 15 | 13 | 86.6667 | |
| ckim-dragen | SNP | tv | map_l125_m2_e1 | homalt | 99.5877 | 99.4238 | 99.7522 | 65.1046 | 6039 | 35 | 6039 | 15 | 13 | 86.6667 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3201 | 99.0507 | 99.5909 | 51.8830 | 3652 | 35 | 3652 | 15 | 12 | 80.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 95.2090 | 97.9167 | 92.6471 | 93.7748 | 188 | 4 | 189 | 15 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.6130 | 91.3876 | 98.0745 | 66.7520 | 764 | 72 | 764 | 15 | 13 | 86.6667 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.2068 | 99.2630 | 99.1506 | 88.9811 | 1751 | 13 | 1751 | 15 | 13 | 86.6667 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7595 | 99.7595 | 99.7595 | 70.6652 | 6221 | 15 | 6221 | 15 | 12 | 80.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7892 | 99.7825 | 99.7959 | 36.4791 | 7339 | 16 | 7335 | 15 | 5 | 33.3333 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.1532 | 99.1262 | 99.1803 | 52.5045 | 1815 | 16 | 1815 | 15 | 2 | 13.3333 | |
| ckim-isaac | INDEL | * | map_l100_m0_e0 | het | 80.6462 | 68.5602 | 97.9050 | 88.4199 | 700 | 321 | 701 | 15 | 5 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l125_m1_e0 | het | 80.3728 | 67.9401 | 98.3749 | 89.2349 | 907 | 428 | 908 | 15 | 5 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l125_m2_e0 | het | 80.7469 | 68.4400 | 98.4504 | 89.8946 | 952 | 439 | 953 | 15 | 5 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | het | 80.8213 | 68.5369 | 98.4709 | 89.9312 | 965 | 443 | 966 | 15 | 5 | 33.3333 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.1175 | 95.4167 | 96.8288 | 81.8217 | 458 | 22 | 458 | 15 | 12 | 80.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m1_e0 | het | 93.5679 | 92.3077 | 94.8630 | 91.0374 | 276 | 23 | 277 | 15 | 2 | 13.3333 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e0 | het | 93.7785 | 92.5566 | 95.0331 | 91.9659 | 286 | 23 | 287 | 15 | 2 | 13.3333 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.4435 | 95.6053 | 99.3537 | 62.1556 | 2306 | 106 | 2306 | 15 | 13 | 86.6667 | |
| ckim-dragen | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.6398 | 98.0237 | 99.2636 | 68.7768 | 1984 | 40 | 2022 | 15 | 3 | 20.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.8470 | 98.2089 | 99.4934 | 48.2524 | 2906 | 53 | 2946 | 15 | 4 | 26.6667 | |
| ckim-dragen | SNP | ti | map_l100_m0_e0 | homalt | 99.4968 | 99.1896 | 99.8059 | 56.2121 | 7711 | 63 | 7714 | 15 | 14 | 93.3333 | |
| cchapple-custom | INDEL | * | map_l100_m2_e1 | homalt | 98.1532 | 97.5020 | 98.8133 | 82.2920 | 1249 | 32 | 1249 | 15 | 11 | 73.3333 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e0 | * | 94.6665 | 97.2826 | 92.1875 | 94.6711 | 179 | 5 | 177 | 15 | 1 | 6.6667 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e0 | het | 93.0049 | 97.5207 | 88.8889 | 94.9457 | 118 | 3 | 120 | 15 | 1 | 6.6667 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 94.6948 | 97.2973 | 92.2280 | 94.7767 | 180 | 5 | 178 | 15 | 1 | 6.6667 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e1 | het | 93.0589 | 97.5410 | 88.9706 | 95.0292 | 119 | 3 | 121 | 15 | 1 | 6.6667 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m1_e0 | * | 92.6206 | 91.0853 | 94.2085 | 83.6799 | 235 | 23 | 244 | 15 | 8 | 53.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e0 | * | 92.7783 | 91.2879 | 94.3182 | 84.3509 | 241 | 23 | 249 | 15 | 8 | 53.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 93.4443 | 94.0741 | 92.8230 | 84.6999 | 127 | 8 | 194 | 15 | 8 | 53.3333 | |
| ckim-dragen | INDEL | D16_PLUS | HG002complexvar | hetalt | 92.9712 | 89.4737 | 96.7532 | 47.3804 | 221 | 26 | 447 | 15 | 15 | 100.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 6.2500 | 97.3899 | 0 | 0 | 1 | 15 | 2 | 13.3333 | |
| ciseli-custom | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 21.0526 | 98.7821 | 0 | 0 | 4 | 15 | 4 | 26.6667 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 70.1834 | 63.2184 | 78.8732 | 73.6059 | 55 | 32 | 56 | 15 | 14 | 93.3333 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 52.3810 | 68.7500 | 42.3077 | 90.1515 | 11 | 5 | 11 | 15 | 12 | 80.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m0_e0 | homalt | 76.5432 | 72.9412 | 80.5195 | 91.6304 | 62 | 23 | 62 | 15 | 11 | 73.3333 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m0_e0 | * | 66.2865 | 65.2174 | 67.3913 | 98.3922 | 30 | 16 | 31 | 15 | 3 | 20.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 9.4488 | 5.6604 | 28.5714 | 87.7907 | 6 | 100 | 6 | 15 | 12 | 80.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 8.0000 | 11.1111 | 6.2500 | 76.8116 | 3 | 24 | 1 | 15 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 56.5463 | 51.0204 | 63.4146 | 78.6458 | 25 | 24 | 26 | 15 | 14 | 93.3333 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.6621 | 99.8310 | 99.4938 | 54.7565 | 2954 | 5 | 2948 | 15 | 1 | 6.6667 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.5376 | 99.8908 | 99.1870 | 59.6192 | 1829 | 2 | 1830 | 15 | 1 | 6.6667 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7501 | 99.8753 | 99.6251 | 50.1743 | 4006 | 5 | 3986 | 15 | 1 | 6.6667 | |