PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21701-21750 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D16_PLUS | HG002complexvar | het | 95.8589 | 93.7669 | 98.0464 | 66.4344 | 1038 | 69 | 803 | 16 | 11 | 68.7500 | |
| raldana-dualsentieon | INDEL | I16_PLUS | * | het | 98.2484 | 97.1302 | 99.3926 | 71.9668 | 2640 | 78 | 2618 | 16 | 8 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m1_e0 | * | 98.3132 | 97.8342 | 98.7970 | 80.6967 | 1310 | 29 | 1314 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e0 | * | 98.3491 | 97.8801 | 98.8227 | 82.1466 | 1339 | 29 | 1343 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e1 | * | 98.3812 | 97.9211 | 98.8456 | 82.2966 | 1366 | 29 | 1370 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.6821 | 90.4306 | 99.3530 | 87.4575 | 2457 | 260 | 2457 | 16 | 11 | 68.7500 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 90.5987 | 83.2905 | 99.3127 | 36.1667 | 2268 | 455 | 2312 | 16 | 16 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 76.0523 | 82.0000 | 70.9091 | 81.7276 | 41 | 9 | 39 | 16 | 13 | 81.2500 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.6705 | 99.6705 | 99.6705 | 66.2895 | 4840 | 16 | 4840 | 16 | 13 | 81.2500 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6119 | 99.7409 | 99.4832 | 68.3306 | 3080 | 8 | 3080 | 16 | 13 | 81.2500 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.6260 | 99.6141 | 99.6379 | 82.9126 | 4130 | 16 | 4128 | 15 | 8 | 53.3333 | |
| rpoplin-dv42 | SNP | tv | segdup | het | 99.6497 | 99.5839 | 99.7157 | 91.3241 | 5265 | 22 | 5261 | 15 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.7985 | 99.2278 | 94.4853 | 59.5238 | 257 | 2 | 257 | 15 | 14 | 93.3333 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.8252 | 99.7211 | 97.9452 | 60.2829 | 715 | 2 | 715 | 15 | 14 | 93.3333 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8006 | 99.6609 | 99.9407 | 54.5675 | 25273 | 86 | 25275 | 15 | 11 | 73.3333 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m1_e0 | het | 98.3404 | 97.9322 | 98.7521 | 81.2217 | 1184 | 25 | 1187 | 15 | 3 | 20.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e0 | het | 98.3621 | 97.9299 | 98.7981 | 81.8710 | 1230 | 26 | 1233 | 15 | 3 | 20.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e1 | het | 98.3776 | 97.9495 | 98.8095 | 82.0257 | 1242 | 26 | 1245 | 15 | 3 | 20.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m1_e0 | * | 98.1075 | 97.6103 | 98.6098 | 84.5171 | 1062 | 26 | 1064 | 15 | 4 | 26.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e0 | * | 98.1990 | 97.7253 | 98.6772 | 85.2305 | 1117 | 26 | 1119 | 15 | 4 | 26.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e1 | * | 98.2208 | 97.7528 | 98.6934 | 85.3084 | 1131 | 26 | 1133 | 15 | 4 | 26.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_siren | het | 99.0760 | 98.8142 | 99.3392 | 78.2192 | 2250 | 27 | 2255 | 15 | 1 | 6.6667 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.7226 | 94.2424 | 95.2077 | 70.8837 | 311 | 19 | 298 | 15 | 12 | 80.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8632 | 98.1277 | 99.6099 | 65.9765 | 3826 | 73 | 3830 | 15 | 10 | 66.6667 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.3235 | 86.4435 | 99.0619 | 31.9285 | 1575 | 247 | 1584 | 15 | 15 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m0_e0 | * | 98.0857 | 97.9143 | 98.2578 | 84.7960 | 845 | 18 | 846 | 15 | 6 | 40.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_siren | * | 96.3403 | 95.6778 | 97.0120 | 83.7698 | 487 | 22 | 487 | 15 | 6 | 40.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | HG002complexvar | homalt | 99.7169 | 99.5464 | 99.8881 | 51.4705 | 13387 | 61 | 13384 | 15 | 14 | 93.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.8100 | 92.2531 | 99.6523 | 26.1175 | 4287 | 360 | 4299 | 15 | 15 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.7653 | 92.1626 | 99.6610 | 30.6426 | 4398 | 374 | 4410 | 15 | 15 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l125_m0_e0 | homalt | 99.2059 | 98.7531 | 99.6629 | 68.6730 | 4435 | 56 | 4435 | 15 | 14 | 93.3333 | |
| rpoplin-dv42 | SNP | tv | HG002compoundhet | het | 99.5284 | 99.3794 | 99.6779 | 54.5836 | 4644 | 29 | 4642 | 15 | 10 | 66.6667 | |
| raldana-dualsentieon | SNP | * | map_l125_m1_e0 | homalt | 99.7690 | 99.6273 | 99.9110 | 62.5841 | 16842 | 63 | 16842 | 15 | 11 | 73.3333 | |
| raldana-dualsentieon | SNP | * | map_l125_m2_e0 | homalt | 99.7723 | 99.6317 | 99.9134 | 65.2834 | 17311 | 64 | 17311 | 15 | 11 | 73.3333 | |
| raldana-dualsentieon | SNP | * | map_l125_m2_e1 | homalt | 99.7744 | 99.6350 | 99.9142 | 65.3032 | 17468 | 64 | 17468 | 15 | 11 | 73.3333 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.0772 | 96.5750 | 99.6268 | 81.0951 | 4004 | 142 | 4004 | 15 | 7 | 46.6667 | |
| raldana-dualsentieon | SNP | tv | map_l250_m0_e0 | het | 96.7458 | 96.1538 | 97.3451 | 92.1972 | 550 | 22 | 550 | 15 | 1 | 6.6667 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e1 | het | 97.5486 | 96.7532 | 98.3571 | 89.4487 | 894 | 30 | 898 | 15 | 6 | 40.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.6891 | 96.9760 | 98.4127 | 66.3940 | 930 | 29 | 930 | 15 | 13 | 86.6667 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.5075 | 99.0450 | 97.9757 | 72.8173 | 726 | 7 | 726 | 15 | 12 | 80.0000 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5350 | 99.4806 | 99.5894 | 54.0098 | 3639 | 19 | 3638 | 15 | 5 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_siren | het | 87.6125 | 93.5897 | 82.3529 | 95.8313 | 73 | 5 | 70 | 15 | 2 | 13.3333 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 87.2180 | 96.6667 | 79.4521 | 92.0131 | 58 | 2 | 58 | 15 | 2 | 13.3333 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 93.4254 | 90.8213 | 96.1832 | 73.6419 | 376 | 38 | 378 | 15 | 8 | 53.3333 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.5879 | 97.0976 | 96.0836 | 58.4599 | 368 | 11 | 368 | 15 | 15 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.5638 | 88.7324 | 80.7692 | 54.9133 | 63 | 8 | 63 | 15 | 15 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_siren | het | 98.8087 | 98.2872 | 99.3357 | 77.5055 | 2238 | 39 | 2243 | 15 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.0579 | 95.3612 | 98.8161 | 48.1800 | 1254 | 61 | 1252 | 15 | 10 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2583 | 98.7709 | 99.7505 | 77.4015 | 6027 | 75 | 5998 | 15 | 5 | 33.3333 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.6837 | 98.6418 | 98.7256 | 72.6343 | 1162 | 16 | 1162 | 15 | 15 | 100.0000 | |