PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21551-21600 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.9578 | 85.8844 | 98.9556 | 88.3338 | 1515 | 249 | 1516 | 16 | 4 | 25.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m0_e0 | * | 97.9085 | 97.9085 | 97.9085 | 92.7817 | 749 | 16 | 749 | 16 | 3 | 18.7500 | |
| hfeng-pmm3 | SNP | tv | map_siren | homalt | 99.8898 | 99.8724 | 99.9071 | 55.8869 | 17218 | 22 | 17215 | 16 | 8 | 50.0000 | |
| jlack-gatk | INDEL | * | map_l100_m2_e1 | homalt | 98.7114 | 98.6729 | 98.7500 | 83.9418 | 1264 | 17 | 1264 | 16 | 8 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | * | hetalt | 94.8361 | 90.8432 | 99.1960 | 37.9289 | 1756 | 177 | 1974 | 16 | 15 | 93.7500 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.5610 | 98.3607 | 96.7742 | 71.5106 | 480 | 8 | 480 | 16 | 12 | 75.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.8587 | 90.8856 | 99.1952 | 37.8556 | 1755 | 176 | 1972 | 16 | 15 | 93.7500 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.8587 | 90.8856 | 99.1952 | 37.8556 | 1755 | 176 | 1972 | 16 | 15 | 93.7500 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.1723 | 98.0188 | 98.3264 | 71.8409 | 940 | 19 | 940 | 16 | 9 | 56.2500 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m0_e0 | * | 83.0189 | 95.6522 | 73.3333 | 97.9784 | 44 | 2 | 44 | 16 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m0_e0 | het | 77.5000 | 93.9394 | 65.9574 | 98.0964 | 31 | 2 | 31 | 16 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 89.8148 | 94.1748 | 85.8407 | 90.7453 | 97 | 6 | 97 | 16 | 2 | 12.5000 | |
| jlack-gatk | INDEL | D6_15 | segdup | het | 90.9091 | 97.8261 | 84.9057 | 96.1483 | 90 | 2 | 90 | 16 | 2 | 12.5000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.9967 | 89.0226 | 97.3422 | 75.0725 | 592 | 73 | 586 | 16 | 11 | 68.7500 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.4994 | 91.4980 | 97.7044 | 66.4420 | 678 | 63 | 681 | 16 | 7 | 43.7500 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7421 | 99.5938 | 99.8908 | 50.6550 | 14710 | 60 | 14636 | 16 | 7 | 43.7500 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.4163 | 99.3280 | 99.5048 | 58.5822 | 3252 | 22 | 3215 | 16 | 13 | 81.2500 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0716 | 98.5896 | 99.5583 | 44.7023 | 3635 | 52 | 3606 | 16 | 8 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.2438 | 97.5990 | 98.8973 | 68.4428 | 1504 | 37 | 1435 | 16 | 3 | 18.7500 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.1502 | 87.3057 | 95.3488 | 87.7362 | 337 | 49 | 328 | 16 | 1 | 6.2500 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.7724 | 88.0435 | 93.6759 | 87.8424 | 243 | 33 | 237 | 16 | 1 | 6.2500 | |
| ltrigg-rtg2 | SNP | * | map_l100_m1_e0 | homalt | 99.8127 | 99.6852 | 99.9406 | 57.7080 | 26918 | 85 | 26916 | 16 | 14 | 87.5000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.2164 | 98.6631 | 95.8115 | 54.1966 | 369 | 5 | 366 | 16 | 6 | 37.5000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 80.2391 | 68.1335 | 97.5758 | 51.1834 | 449 | 210 | 644 | 16 | 13 | 81.2500 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 80.2391 | 68.1335 | 97.5758 | 51.1834 | 449 | 210 | 644 | 16 | 13 | 81.2500 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 77.7525 | 64.8746 | 97.0093 | 45.7404 | 181 | 98 | 519 | 16 | 13 | 81.2500 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.1120 | 87.5000 | 67.3469 | 73.6559 | 21 | 3 | 33 | 16 | 14 | 87.5000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2925 | 95.9395 | 98.6842 | 76.0063 | 1205 | 51 | 1200 | 16 | 7 | 43.7500 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2643 | 98.8474 | 99.6847 | 73.5302 | 5060 | 59 | 5058 | 16 | 12 | 75.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.1964 | 99.5935 | 96.8379 | 59.5200 | 490 | 2 | 490 | 16 | 15 | 93.7500 | |
| raldana-dualsentieon | INDEL | * | map_l150_m0_e0 | het | 96.0833 | 96.7742 | 95.4023 | 90.5691 | 330 | 11 | 332 | 16 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m1_e0 | * | 94.5813 | 94.4262 | 94.7368 | 94.7396 | 288 | 17 | 288 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e0 | * | 95.0076 | 94.8640 | 95.1515 | 95.0798 | 314 | 17 | 314 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e1 | * | 95.0376 | 94.8949 | 95.1807 | 95.1912 | 316 | 17 | 316 | 16 | 2 | 12.5000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 68.8525 | 87.5000 | 56.7568 | 72.9927 | 21 | 3 | 21 | 16 | 15 | 93.7500 | |
| ndellapenna-hhga | SNP | * | func_cds | * | 99.9367 | 99.9614 | 99.9119 | 23.5700 | 18143 | 7 | 18143 | 16 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | func_cds | het | 99.9060 | 99.9552 | 99.8568 | 24.2730 | 11156 | 5 | 11156 | 16 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.5915 | 85.8696 | 93.6508 | 89.2994 | 237 | 39 | 236 | 16 | 7 | 43.7500 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.0232 | 87.7828 | 92.3810 | 89.6907 | 194 | 27 | 194 | 16 | 9 | 56.2500 | |
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.4054 | 96.4718 | 98.3573 | 68.7720 | 957 | 35 | 958 | 16 | 6 | 37.5000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.2204 | 94.5844 | 97.9140 | 85.0487 | 751 | 43 | 751 | 16 | 7 | 43.7500 | |
| ndellapenna-hhga | SNP | tv | segdup | homalt | 99.6917 | 99.8765 | 99.5077 | 90.2309 | 3234 | 4 | 3234 | 16 | 16 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l150_m2_e0 | homalt | 81.0641 | 69.8545 | 96.5591 | 89.8494 | 336 | 145 | 449 | 16 | 9 | 56.2500 | |
| qzeng-custom | INDEL | * | map_l150_m2_e1 | homalt | 81.5445 | 70.5285 | 96.6387 | 89.8225 | 347 | 145 | 460 | 16 | 9 | 56.2500 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6381 | 99.7391 | 99.5373 | 34.1584 | 3441 | 9 | 3442 | 16 | 3 | 18.7500 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m1_e0 | het | 97.9852 | 96.2712 | 99.7612 | 57.9109 | 6687 | 259 | 6685 | 16 | 1 | 6.2500 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 68.8406 | 90.4762 | 55.5556 | 99.9404 | 19 | 2 | 20 | 16 | 16 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | HG002complexvar | hetalt | 89.3834 | 81.7308 | 98.6171 | 71.1327 | 1105 | 247 | 1141 | 16 | 16 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | * | 54.4256 | 40.9357 | 81.1765 | 90.6181 | 70 | 101 | 69 | 16 | 14 | 87.5000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | * | 56.5892 | 42.9348 | 82.9787 | 91.5996 | 79 | 105 | 78 | 16 | 14 | 87.5000 | |