PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21101-21150 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | * | map_l250_m2_e0 | homalt | 99.4980 | 99.6277 | 99.3687 | 87.8966 | 2676 | 10 | 2676 | 17 | 6 | 35.2941 | |
| hfeng-pmm2 | SNP | * | map_l250_m2_e1 | homalt | 99.5040 | 99.6321 | 99.3761 | 87.9531 | 2708 | 10 | 2708 | 17 | 6 | 35.2941 | |
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.6498 | 97.8448 | 99.4681 | 65.4748 | 3178 | 70 | 3179 | 17 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.5317 | 95.5639 | 99.5821 | 76.9923 | 4050 | 188 | 4051 | 17 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | map_siren | homalt | 99.9014 | 99.9014 | 99.9014 | 56.1199 | 17223 | 17 | 17220 | 17 | 9 | 52.9412 | |
| hfeng-pmm1 | SNP | * | map_l250_m1_e0 | homalt | 99.4527 | 99.5940 | 99.3117 | 86.9979 | 2453 | 10 | 2453 | 17 | 6 | 35.2941 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e0 | homalt | 99.4794 | 99.5905 | 99.3685 | 87.8799 | 2675 | 11 | 2675 | 17 | 6 | 35.2941 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e1 | homalt | 99.4855 | 99.5953 | 99.3759 | 87.9341 | 2707 | 11 | 2707 | 17 | 6 | 35.2941 | |
| hfeng-pmm1 | SNP | ti | map_l125_m1_e0 | homalt | 99.8143 | 99.7827 | 99.8460 | 66.1307 | 11021 | 24 | 11021 | 17 | 7 | 41.1765 | |
| hfeng-pmm1 | SNP | ti | map_l125_m2_e0 | homalt | 99.8195 | 99.7887 | 99.8502 | 68.6124 | 11334 | 24 | 11334 | 17 | 7 | 41.1765 | |
| hfeng-pmm1 | SNP | ti | map_l125_m2_e1 | homalt | 99.8210 | 99.7905 | 99.8515 | 68.6411 | 11434 | 24 | 11434 | 17 | 7 | 41.1765 | |
| hfeng-pmm1 | SNP | tv | map_siren | homalt | 99.8956 | 99.8898 | 99.9014 | 56.0205 | 17221 | 19 | 17219 | 17 | 8 | 47.0588 | |
| hfeng-pmm2 | INDEL | * | map_l150_m0_e0 | het | 96.5459 | 97.9472 | 95.1841 | 92.9709 | 334 | 7 | 336 | 17 | 1 | 5.8824 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e0 | het | 94.6636 | 97.1429 | 92.3077 | 96.3848 | 204 | 6 | 204 | 17 | 2 | 11.7647 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e1 | het | 94.6882 | 97.1564 | 92.3423 | 96.4734 | 205 | 6 | 205 | 17 | 2 | 11.7647 | |
| eyeh-varpipe | SNP | * | HG002complexvar | hetalt | 99.7172 | 99.6774 | 99.7570 | 25.7273 | 309 | 1 | 6978 | 17 | 16 | 94.1176 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 49.4845 | 61.5385 | 41.3793 | 93.1765 | 16 | 10 | 12 | 17 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4574 | 99.5649 | 99.3502 | 34.3868 | 2746 | 12 | 2599 | 17 | 7 | 41.1765 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m0_e0 | het | 97.1284 | 97.1235 | 97.1332 | 84.0205 | 574 | 17 | 576 | 17 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | HG002compoundhet | hetalt | 91.1254 | 84.6645 | 98.6540 | 40.8708 | 6901 | 1250 | 1246 | 17 | 17 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 79.2391 | 67.4470 | 96.0280 | 47.6132 | 605 | 292 | 411 | 17 | 16 | 94.1176 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 88.1679 | 84.2975 | 92.4107 | 60.6327 | 204 | 38 | 207 | 17 | 16 | 94.1176 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 60.3104 | 45.6376 | 88.8889 | 56.5341 | 68 | 81 | 136 | 17 | 17 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7052 | 99.8278 | 99.5828 | 48.0230 | 4058 | 7 | 4058 | 17 | 5 | 29.4118 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 89.6250 | 81.2640 | 99.9038 | 61.4872 | 17796 | 4103 | 17660 | 17 | 16 | 94.1176 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 84.4268 | 73.3771 | 99.3944 | 39.7122 | 2792 | 1013 | 2790 | 17 | 15 | 88.2353 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 62.4672 | 47.4093 | 91.5423 | 97.1706 | 183 | 203 | 184 | 17 | 6 | 35.2941 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.7303 | 93.9215 | 99.7122 | 49.8216 | 5887 | 381 | 5890 | 17 | 4 | 23.5294 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 86.8721 | 77.5325 | 98.7699 | 72.5739 | 1370 | 397 | 1365 | 17 | 15 | 88.2353 | |
| gduggal-bwavard | INDEL | I1_5 | * | homalt | 95.1435 | 90.7626 | 99.9687 | 33.2973 | 54846 | 5582 | 54343 | 17 | 11 | 64.7059 | |
| gduggal-bwavard | SNP | ti | map_l100_m1_e0 | homalt | 98.5262 | 97.1882 | 99.9016 | 59.9578 | 17455 | 505 | 17256 | 17 | 13 | 76.4706 | |
| eyeh-varpipe | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 83.6538 | 94.4474 | 0 | 0 | 87 | 17 | 13 | 76.4706 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 75.0000 | 95.3168 | 0 | 0 | 51 | 17 | 13 | 76.4706 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 75.0000 | 95.3168 | 0 | 0 | 51 | 17 | 13 | 76.4706 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 63.0435 | 92.8903 | 0 | 0 | 29 | 17 | 8 | 47.0588 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 81.1111 | 0 | 0 | 0 | 17 | 8 | 47.0588 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 9.8376 | 5.2308 | 82.4742 | 81.6635 | 51 | 924 | 80 | 17 | 16 | 94.1176 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 93.1964 | 89.2944 | 97.4551 | 80.1427 | 367 | 44 | 651 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 87.7794 | 88.9764 | 86.6142 | 67.2680 | 113 | 14 | 110 | 17 | 11 | 64.7059 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | * | 81.4941 | 77.6699 | 85.7143 | 87.9676 | 80 | 23 | 102 | 17 | 16 | 94.1176 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 21.7822 | 12.3499 | 92.2018 | 54.2977 | 72 | 511 | 201 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 16.5137 | 9.1047 | 88.6667 | 60.4222 | 60 | 599 | 133 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 16.5137 | 9.1047 | 88.6667 | 60.4222 | 60 | 599 | 133 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 94.1583 | 92.1965 | 96.2054 | 74.5165 | 319 | 27 | 431 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m1_e0 | het | 97.4411 | 97.3251 | 97.5575 | 83.6658 | 473 | 13 | 679 | 17 | 10 | 58.8235 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e0 | het | 97.4137 | 97.1831 | 97.6454 | 84.4497 | 483 | 14 | 705 | 17 | 10 | 58.8235 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 15.0000 | 57.4468 | 0 | 92 | 3 | 17 | 17 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 84.3152 | 73.5419 | 98.7866 | 76.1775 | 1387 | 499 | 1384 | 17 | 13 | 76.4706 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 57.2505 | 41.9890 | 89.9408 | 89.1458 | 152 | 210 | 152 | 17 | 17 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 73.3411 | 59.7723 | 94.8795 | 89.6250 | 315 | 212 | 315 | 17 | 16 | 94.1176 | |