PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20901-20950 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.5426 | 98.1027 | 98.9865 | 64.0849 | 1758 | 34 | 1758 | 18 | 14 | 77.7778 | |
| jli-custom | INDEL | D1_5 | map_siren | het | 99.2764 | 99.3412 | 99.2116 | 78.6894 | 2262 | 15 | 2265 | 18 | 3 | 16.6667 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4403 | 91.3876 | 97.7041 | 63.8876 | 764 | 72 | 766 | 18 | 15 | 83.3333 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.9276 | 97.0798 | 98.7903 | 74.9326 | 1496 | 45 | 1470 | 18 | 5 | 27.7778 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.8974 | 96.3612 | 97.4395 | 71.6647 | 715 | 27 | 685 | 18 | 7 | 38.8889 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.9636 | 95.9660 | 97.9821 | 72.0814 | 904 | 38 | 874 | 18 | 7 | 38.8889 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6872 | 99.6632 | 99.7112 | 69.9339 | 6215 | 21 | 6215 | 18 | 12 | 66.6667 | |
| jmaeng-gatk | INDEL | D16_PLUS | HG002compoundhet | homalt | 47.0588 | 100.0000 | 30.7692 | 74.2574 | 8 | 0 | 8 | 18 | 18 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.6207 | 99.7211 | 97.5443 | 61.5021 | 715 | 2 | 715 | 18 | 17 | 94.4444 | |
| jpowers-varprowl | INDEL | * | segdup | homalt | 93.9252 | 90.2083 | 97.9615 | 91.6422 | 866 | 94 | 865 | 18 | 17 | 94.4444 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 19.1153 | 11.0818 | 69.4915 | 82.2823 | 42 | 337 | 41 | 18 | 11 | 61.1111 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e0 | het | 96.7120 | 94.3650 | 99.1788 | 77.1166 | 2177 | 130 | 2174 | 18 | 2 | 11.1111 | |
| ltrigg-rtg1 | INDEL | * | segdup | * | 98.6010 | 97.9264 | 99.2849 | 92.9892 | 2503 | 53 | 2499 | 18 | 5 | 27.7778 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.8894 | 87.0445 | 97.3054 | 71.2069 | 645 | 96 | 650 | 18 | 6 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.0884 | 96.5308 | 99.6971 | 74.3115 | 5732 | 206 | 5924 | 18 | 18 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | map_l100_m0_e0 | homalt | 99.7372 | 99.6299 | 99.8447 | 62.2918 | 11577 | 43 | 11575 | 18 | 15 | 83.3333 | |
| ltrigg-rtg1 | SNP | tv | HG002compoundhet | het | 98.8241 | 98.0526 | 99.6078 | 50.3515 | 4582 | 91 | 4572 | 18 | 4 | 22.2222 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | het | 97.8147 | 96.1145 | 99.5761 | 59.9585 | 4230 | 171 | 4228 | 18 | 3 | 16.6667 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 78.3552 | 66.6667 | 95.0139 | 97.4690 | 2 | 1 | 343 | 18 | 1 | 5.5556 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 86.3636 | 95.4183 | 0 | 1 | 114 | 18 | 1 | 5.5556 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 86.3636 | 95.4183 | 0 | 1 | 114 | 18 | 1 | 5.5556 | |
| jmaeng-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.2415 | 98.8665 | 99.6193 | 67.1895 | 4710 | 54 | 4710 | 18 | 5 | 27.7778 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7211 | 99.6873 | 99.7550 | 36.7324 | 7332 | 23 | 7328 | 18 | 4 | 22.2222 | |
| jmaeng-gatk | SNP | * | map_siren | homalt | 91.1261 | 83.7262 | 99.9610 | 54.5250 | 46180 | 8976 | 46171 | 18 | 18 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 90.1734 | 87.6404 | 92.8571 | 52.1822 | 234 | 33 | 234 | 18 | 13 | 72.2222 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m1_e0 | * | 93.8197 | 91.5020 | 96.2578 | 89.2801 | 463 | 43 | 463 | 18 | 11 | 61.1111 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e0 | * | 93.8735 | 91.5222 | 96.3489 | 90.4328 | 475 | 44 | 475 | 18 | 11 | 61.1111 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.5482 | 99.9091 | 99.1899 | 44.8772 | 2199 | 2 | 2204 | 18 | 12 | 66.6667 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.2220 | 86.2903 | 86.1538 | 93.2079 | 107 | 17 | 112 | 18 | 1 | 5.5556 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.8147 | 96.5909 | 97.0395 | 67.8647 | 595 | 21 | 590 | 18 | 16 | 88.8889 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m1_e0 | * | 92.0000 | 94.1520 | 89.9441 | 96.9501 | 161 | 10 | 161 | 18 | 1 | 5.5556 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m1_e0 | het | 89.2704 | 93.6937 | 85.2459 | 97.3920 | 104 | 7 | 104 | 18 | 1 | 5.5556 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m2_e0 | * | 92.5532 | 94.5652 | 90.6250 | 97.1080 | 174 | 10 | 174 | 18 | 1 | 5.5556 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m2_e0 | het | 90.1186 | 94.2149 | 86.3636 | 97.4995 | 114 | 7 | 114 | 18 | 1 | 5.5556 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m2_e1 | * | 92.5926 | 94.5946 | 90.6736 | 97.1634 | 175 | 10 | 175 | 18 | 1 | 5.5556 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m2_e1 | het | 90.1961 | 94.2623 | 86.4662 | 97.5411 | 115 | 7 | 115 | 18 | 1 | 5.5556 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.6451 | 98.4501 | 98.8410 | 73.7492 | 1588 | 25 | 1535 | 18 | 13 | 72.2222 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 90.0691 | 91.5033 | 88.6792 | 75.9091 | 140 | 13 | 141 | 18 | 12 | 66.6667 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7960 | 99.6973 | 99.8950 | 55.4424 | 17125 | 52 | 17126 | 18 | 14 | 77.7778 | |
| egarrison-hhga | SNP | * | map_l100_m1_e0 | homalt | 99.8480 | 99.7630 | 99.9332 | 60.8894 | 26939 | 64 | 26939 | 18 | 17 | 94.4444 | |
| egarrison-hhga | SNP | ti | map_l150_m0_e0 | het | 98.7730 | 97.9203 | 99.6406 | 81.1953 | 4991 | 106 | 4991 | 18 | 6 | 33.3333 | |
| egarrison-hhga | SNP | ti | map_l250_m1_e0 | * | 98.7333 | 97.8816 | 99.6000 | 88.1610 | 4482 | 97 | 4482 | 18 | 8 | 44.4444 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.4177 | 99.1702 | 99.6664 | 74.8848 | 5378 | 45 | 5377 | 18 | 12 | 66.6667 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.4177 | 99.1702 | 99.6664 | 74.8848 | 5378 | 45 | 5377 | 18 | 12 | 66.6667 | |
| egarrison-hhga | SNP | tv | map_l125_m0_e0 | het | 98.8440 | 98.1141 | 99.5849 | 74.9393 | 4318 | 83 | 4318 | 18 | 7 | 38.8889 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 56.2806 | 41.3174 | 88.2353 | 79.4355 | 69 | 98 | 135 | 18 | 18 | 100.0000 | |
| eyeh-varpipe | INDEL | * | map_l125_m0_e0 | homalt | 96.8008 | 97.1831 | 96.4215 | 89.3815 | 276 | 8 | 485 | 18 | 16 | 88.8889 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e0 | * | 96.1728 | 96.0725 | 96.2733 | 98.1347 | 318 | 13 | 465 | 18 | 12 | 66.6667 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e1 | * | 96.1961 | 96.0961 | 96.2963 | 98.2219 | 320 | 13 | 468 | 18 | 12 | 66.6667 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 94.6735 | 92.3896 | 97.0732 | 71.9306 | 607 | 50 | 597 | 18 | 6 | 33.3333 | |