PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20851-20900 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 86.3432 | 96.6102 | 78.0488 | 75.0760 | 57 | 2 | 64 | 18 | 18 | 100.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 78.3505 | 92.6829 | 67.8571 | 90.1060 | 38 | 3 | 38 | 18 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | map_l100_m0_e0 | * | 45.8193 | 29.7342 | 99.8160 | 91.0946 | 9765 | 23076 | 9765 | 18 | 6 | 33.3333 | |
| asubramanian-gatk | SNP | * | map_l150_m1_e0 | * | 38.6014 | 23.9309 | 99.7548 | 94.4087 | 7325 | 23284 | 7322 | 18 | 5 | 27.7778 | |
| asubramanian-gatk | SNP | * | map_l150_m1_e0 | het | 41.8810 | 26.5117 | 99.6495 | 95.0572 | 5121 | 14195 | 5118 | 18 | 5 | 27.7778 | |
| asubramanian-gatk | SNP | ti | * | hetalt | 95.6522 | 94.5017 | 96.8310 | 46.4151 | 550 | 32 | 550 | 18 | 1 | 5.5556 | |
| asubramanian-gatk | SNP | ti | map_l125_m2_e0 | * | 48.4647 | 32.0015 | 99.8144 | 91.1697 | 9683 | 20575 | 9681 | 18 | 6 | 33.3333 | |
| asubramanian-gatk | SNP | ti | map_l125_m2_e0 | het | 51.5556 | 34.7637 | 99.7264 | 92.2284 | 6562 | 12314 | 6560 | 18 | 6 | 33.3333 | |
| asubramanian-gatk | SNP | ti | map_l125_m2_e1 | * | 48.6953 | 32.2026 | 99.8174 | 91.1355 | 9844 | 20725 | 9842 | 18 | 6 | 33.3333 | |
| asubramanian-gatk | SNP | ti | map_l125_m2_e1 | het | 51.8016 | 34.9872 | 99.7311 | 92.1950 | 6678 | 12409 | 6676 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9127 | 98.8843 | 98.9412 | 74.7999 | 1684 | 19 | 1682 | 18 | 4 | 22.2222 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.1150 | 99.9061 | 98.3364 | 68.3163 | 1064 | 1 | 1064 | 18 | 18 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1776 | 96.3907 | 97.9775 | 74.4326 | 908 | 34 | 872 | 18 | 13 | 72.2222 | |
| jlack-gatk | SNP | * | map_l150_m1_e0 | homalt | 99.0703 | 98.3146 | 99.8379 | 69.3588 | 11083 | 190 | 11083 | 18 | 13 | 72.2222 | |
| jlack-gatk | SNP | * | map_l150_m2_e0 | homalt | 99.0914 | 98.3503 | 99.8438 | 71.6709 | 11506 | 193 | 11506 | 18 | 13 | 72.2222 | |
| jlack-gatk | SNP | * | map_l150_m2_e1 | homalt | 99.0927 | 98.3512 | 99.8455 | 71.6669 | 11632 | 195 | 11632 | 18 | 13 | 72.2222 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4965 | 99.7175 | 99.2765 | 38.0786 | 2471 | 7 | 2470 | 18 | 1 | 5.5556 | |
| jlack-gatk | SNP | tv | HG002complexvar | homalt | 99.9385 | 99.8959 | 99.9811 | 22.6324 | 95012 | 99 | 94994 | 18 | 14 | 77.7778 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8006 | 99.8575 | 99.7437 | 62.4217 | 7009 | 10 | 7005 | 18 | 3 | 16.6667 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.5613 | 90.0889 | 99.5008 | 36.1205 | 3445 | 379 | 3588 | 18 | 17 | 94.4444 | |
| jli-custom | INDEL | * | map_l125_m1_e0 | het | 98.3481 | 98.0524 | 98.6456 | 86.0194 | 1309 | 26 | 1311 | 18 | 4 | 22.2222 | |
| jli-custom | INDEL | * | map_l125_m2_e0 | het | 98.3415 | 97.9871 | 98.6985 | 86.8786 | 1363 | 28 | 1365 | 18 | 4 | 22.2222 | |
| jli-custom | INDEL | * | map_l125_m2_e1 | het | 98.3616 | 98.0114 | 98.7143 | 86.9876 | 1380 | 28 | 1382 | 18 | 4 | 22.2222 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.0406 | 95.3595 | 98.7821 | 83.5045 | 1459 | 71 | 1460 | 18 | 9 | 50.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.0406 | 95.3595 | 98.7821 | 83.5045 | 1459 | 71 | 1460 | 18 | 9 | 50.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | HG002complexvar | homalt | 99.8699 | 99.8736 | 99.8662 | 51.8330 | 13431 | 17 | 13436 | 18 | 16 | 88.8889 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5585 | 99.2191 | 99.9003 | 37.7315 | 18041 | 142 | 18038 | 18 | 6 | 33.3333 | |
| hfeng-pmm3 | SNP | ti | HG002compoundhet | * | 98.2879 | 96.7330 | 99.8937 | 34.5867 | 16907 | 571 | 16909 | 18 | 8 | 44.4444 | |
| hfeng-pmm3 | SNP | ti | map_l125_m1_e0 | homalt | 99.8144 | 99.7918 | 99.8370 | 66.0308 | 11022 | 23 | 11022 | 18 | 8 | 44.4444 | |
| hfeng-pmm3 | SNP | ti | map_l125_m2_e0 | homalt | 99.8195 | 99.7975 | 99.8415 | 68.5286 | 11335 | 23 | 11335 | 18 | 8 | 44.4444 | |
| hfeng-pmm3 | SNP | ti | map_l125_m2_e1 | homalt | 99.8210 | 99.7993 | 99.8428 | 68.5547 | 11435 | 23 | 11435 | 18 | 8 | 44.4444 | |
| hfeng-pmm2 | INDEL | D16_PLUS | * | homalt | 99.0257 | 99.1135 | 98.9381 | 67.4789 | 1677 | 15 | 1677 | 18 | 12 | 66.6667 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6805 | 98.7990 | 98.5623 | 71.8841 | 1234 | 15 | 1234 | 18 | 12 | 66.6667 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.6805 | 98.7990 | 98.5623 | 71.8841 | 1234 | 15 | 1234 | 18 | 12 | 66.6667 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.9792 | 95.6179 | 98.3798 | 79.2724 | 1091 | 50 | 1093 | 18 | 12 | 66.6667 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.5639 | 99.8469 | 97.3134 | 72.4846 | 652 | 1 | 652 | 18 | 17 | 94.4444 | |
| hfeng-pmm2 | SNP | ti | HG002compoundhet | * | 98.2110 | 96.5843 | 99.8935 | 34.1246 | 16881 | 597 | 16883 | 18 | 7 | 38.8889 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.3477 | 97.0107 | 99.7221 | 77.9349 | 6458 | 199 | 6459 | 18 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7891 | 99.6426 | 99.9361 | 57.3259 | 28159 | 101 | 28161 | 18 | 11 | 61.1111 | |
| hfeng-pmm3 | INDEL | D16_PLUS | HG002complexvar | * | 96.9227 | 95.0700 | 98.8491 | 64.9955 | 1562 | 81 | 1546 | 18 | 11 | 61.1111 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.4871 | 99.6937 | 97.3094 | 71.3122 | 651 | 2 | 651 | 18 | 17 | 94.4444 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5502 | 99.2026 | 99.9003 | 37.1632 | 18038 | 145 | 18035 | 18 | 3 | 16.6667 | |
| hfeng-pmm2 | INDEL | * | map_l250_m1_e0 | * | 95.8065 | 97.3770 | 94.2857 | 95.7792 | 297 | 8 | 297 | 18 | 4 | 22.2222 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 83.3333 | 86.2069 | 80.6452 | 94.7428 | 75 | 12 | 75 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.8710 | 86.6667 | 81.2500 | 95.3033 | 78 | 12 | 78 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 84.4221 | 86.5979 | 82.3529 | 95.1126 | 84 | 13 | 84 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.5224 | 100.0000 | 91.4286 | 46.0154 | 192 | 0 | 192 | 18 | 17 | 94.4444 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 95.3225 | 94.9541 | 95.6938 | 84.8606 | 414 | 22 | 400 | 18 | 4 | 22.2222 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6018 | 99.6976 | 99.5062 | 56.7205 | 3627 | 11 | 3627 | 18 | 18 | 100.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.2076 | 96.0561 | 98.3871 | 78.6982 | 1096 | 45 | 1098 | 18 | 11 | 61.1111 | |