PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20701-20750 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.8307 | 99.0462 | 98.6162 | 73.5809 | 1350 | 13 | 1354 | 19 | 4 | 21.0526 | |
| qzeng-custom | INDEL | C6_15 | * | * | 85.2713 | 100.0000 | 74.3243 | 96.3973 | 7 | 0 | 55 | 19 | 1 | 5.2632 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m2_e1 | * | 64.0000 | 88.8889 | 50.0000 | 97.5719 | 16 | 2 | 19 | 19 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 68.7222 | 62.9630 | 75.6410 | 66.6667 | 17 | 10 | 59 | 19 | 12 | 63.1579 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 42.4779 | 75.0000 | 29.6296 | 79.2308 | 3 | 1 | 8 | 19 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 84.9421 | 93.7500 | 77.6471 | 53.8043 | 15 | 1 | 66 | 19 | 2 | 10.5263 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.2008 | 97.1098 | 95.3086 | 72.1458 | 336 | 10 | 386 | 19 | 9 | 47.3684 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.4594 | 98.2392 | 98.6806 | 75.0087 | 1339 | 24 | 1421 | 19 | 5 | 26.3158 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 99.9744 | 0 | 1 | 0 | 19 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 80.2198 | 0 | 0 | 0 | 18 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 59.0909 | 100.0000 | 41.9355 | 97.7714 | 12 | 0 | 13 | 18 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 62.5698 | 93.3333 | 47.0588 | 97.6918 | 14 | 1 | 16 | 18 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m2_e0 | * | 66.4481 | 94.1176 | 51.3514 | 97.6206 | 16 | 1 | 19 | 18 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m0_e0 | * | 84.7268 | 75.8065 | 96.0265 | 93.8384 | 376 | 120 | 435 | 18 | 15 | 83.3333 | |
| qzeng-custom | INDEL | D1_5 | segdup | het | 98.1482 | 98.6994 | 97.6032 | 95.6595 | 683 | 9 | 733 | 18 | 4 | 22.2222 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 82.7942 | 81.6901 | 83.9286 | 92.8297 | 58 | 13 | 94 | 18 | 3 | 16.6667 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e1 | het | 82.7942 | 81.6901 | 83.9286 | 92.9204 | 58 | 13 | 94 | 18 | 3 | 16.6667 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 66.6667 | 66.6667 | 66.6667 | 63.7584 | 2 | 1 | 36 | 18 | 12 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e1 | homalt | 82.8272 | 72.2222 | 97.0827 | 79.5966 | 390 | 150 | 599 | 18 | 3 | 16.6667 | |
| qzeng-custom | INDEL | I6_15 | func_cds | * | 79.2079 | 93.0233 | 68.9655 | 30.1205 | 40 | 3 | 40 | 18 | 3 | 16.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | * | 75.9931 | 69.8413 | 83.3333 | 84.8527 | 88 | 38 | 90 | 18 | 12 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | * | 75.8724 | 69.5312 | 83.4862 | 85.1499 | 89 | 39 | 91 | 18 | 12 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | segdup | * | 86.7731 | 83.7696 | 90.0000 | 91.8182 | 160 | 31 | 162 | 18 | 17 | 94.4444 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 88.3886 | 90.9836 | 85.9375 | 59.6215 | 111 | 11 | 110 | 18 | 18 | 100.0000 | |
| mlin-fermikit | SNP | ti | map_l150_m0_e0 | het | 44.5289 | 28.7424 | 98.7862 | 66.7936 | 1465 | 3632 | 1465 | 18 | 3 | 16.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.5480 | 98.7793 | 98.3178 | 63.7657 | 1052 | 13 | 1052 | 18 | 14 | 77.7778 | |
| ndellapenna-hhga | SNP | ti | map_l150_m0_e0 | het | 98.1786 | 96.7628 | 99.6364 | 79.7339 | 4932 | 165 | 4932 | 18 | 7 | 38.8889 | |
| ndellapenna-hhga | SNP | ti | map_l250_m2_e1 | * | 98.3031 | 97.0055 | 99.6358 | 87.9552 | 4924 | 152 | 4924 | 18 | 9 | 50.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 80.2198 | 0 | 0 | 0 | 18 | 0 | 0.0000 | ||
| ltrigg-rtg2 | SNP | ti | map_l150_m2_e0 | het | 98.2167 | 96.6307 | 99.8556 | 61.9797 | 12447 | 434 | 12450 | 18 | 1 | 5.5556 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m2_e1 | het | 98.2274 | 96.6500 | 99.8571 | 62.1754 | 12579 | 436 | 12581 | 18 | 1 | 5.5556 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m1_e0 | * | 98.6367 | 97.4707 | 99.8310 | 62.1132 | 10636 | 276 | 10635 | 18 | 2 | 11.1111 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | het | 98.0436 | 96.4010 | 99.7431 | 60.6061 | 6991 | 261 | 6989 | 18 | 1 | 5.5556 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | het | 98.0696 | 96.4480 | 99.7466 | 60.6896 | 7087 | 261 | 7085 | 18 | 1 | 5.5556 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 89.2733 | 88.9535 | 89.5954 | 83.6638 | 153 | 19 | 155 | 18 | 4 | 22.2222 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m0_e0 | * | 42.1053 | 66.6667 | 30.7692 | 92.3754 | 8 | 4 | 8 | 18 | 2 | 11.1111 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 82.9460 | 70.9983 | 99.7285 | 65.0277 | 6600 | 2696 | 6611 | 18 | 18 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.9326 | 91.0397 | 99.1732 | 34.1898 | 2154 | 212 | 2159 | 18 | 18 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.4581 | 99.2238 | 97.7041 | 73.3786 | 767 | 6 | 766 | 18 | 3 | 16.6667 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 95.1379 | 92.3154 | 98.1386 | 59.7586 | 925 | 77 | 949 | 18 | 6 | 33.3333 | |
| ltrigg-rtg2 | SNP | * | map_l100_m2_e0 | homalt | 99.8108 | 99.6875 | 99.9344 | 60.3899 | 27437 | 86 | 27435 | 18 | 16 | 88.8889 | |
| ltrigg-rtg2 | SNP | * | map_l100_m2_e1 | homalt | 99.8127 | 99.6906 | 99.9351 | 60.3846 | 27710 | 86 | 27708 | 18 | 16 | 88.8889 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 82.2869 | 90.1639 | 75.6757 | 85.4331 | 55 | 6 | 56 | 18 | 11 | 61.1111 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.7571 | 85.6250 | 87.9195 | 87.5626 | 137 | 23 | 131 | 18 | 10 | 55.5556 | |
| raldana-dualsentieon | INDEL | * | map_l125_m0_e0 | het | 96.4980 | 96.0818 | 96.9178 | 87.6192 | 564 | 23 | 566 | 18 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m0_e0 | * | 96.6054 | 96.6926 | 96.5184 | 90.3545 | 497 | 17 | 499 | 18 | 2 | 11.1111 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 58.1470 | 86.6667 | 43.7500 | 77.4648 | 13 | 2 | 14 | 18 | 17 | 94.4444 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m0_e0 | het | 95.0000 | 98.9583 | 91.3462 | 93.7008 | 190 | 2 | 190 | 18 | 5 | 27.7778 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 78.7251 | 92.6829 | 68.4211 | 93.1408 | 38 | 3 | 39 | 18 | 6 | 33.3333 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.9631 | 100.0000 | 97.9475 | 55.8853 | 858 | 0 | 859 | 18 | 12 | 66.6667 | |