PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20151-20200 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 56.5217 | 91.5751 | 0 | 0 | 26 | 20 | 8 | 40.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 52.3810 | 91.4634 | 0 | 0 | 22 | 20 | 8 | 40.0000 | |
| eyeh-varpipe | INDEL | I6_15 | segdup | * | 81.1709 | 76.0000 | 87.0968 | 88.6197 | 133 | 42 | 135 | 20 | 20 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m1_e0 | homalt | 99.8788 | 99.8719 | 99.8856 | 62.1452 | 17937 | 23 | 17464 | 20 | 12 | 60.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e0 | homalt | 99.8811 | 99.8744 | 99.8878 | 64.4546 | 18286 | 23 | 17806 | 20 | 12 | 60.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 73.3373 | 87.8049 | 62.9630 | 84.4380 | 36 | 5 | 34 | 20 | 7 | 35.0000 | |
| gduggal-bwafb | INDEL | * | segdup | het | 96.9413 | 95.2251 | 98.7204 | 94.3651 | 1396 | 70 | 1543 | 20 | 8 | 40.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m1_e0 | * | 97.2822 | 97.3501 | 97.2145 | 88.4436 | 698 | 19 | 698 | 20 | 2 | 10.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 90.8745 | 84.4894 | 98.3036 | 44.9837 | 6809 | 1250 | 1159 | 20 | 20 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 90.8745 | 84.4894 | 98.3036 | 44.9837 | 6809 | 1250 | 1159 | 20 | 20 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 51.1783 | 36.9565 | 83.1933 | 65.7061 | 153 | 261 | 99 | 20 | 20 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 31.6497 | 19.5122 | 83.7398 | 62.9518 | 48 | 198 | 103 | 20 | 20 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_siren | het | 97.2030 | 95.6573 | 98.7995 | 79.6283 | 1608 | 73 | 1646 | 20 | 10 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | HG002complexvar | homalt | 99.9811 | 99.9726 | 99.9897 | 18.3281 | 193410 | 53 | 193401 | 20 | 20 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.2761 | 99.4855 | 99.0676 | 75.6554 | 2127 | 11 | 2125 | 20 | 18 | 90.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 89.0110 | 82.5328 | 96.5928 | 74.6983 | 567 | 120 | 567 | 20 | 17 | 85.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.9920 | 92.6052 | 99.6360 | 39.6618 | 5460 | 436 | 5475 | 20 | 20 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.9920 | 92.6052 | 99.6360 | 39.6618 | 5460 | 436 | 5475 | 20 | 20 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.6468 | 99.5944 | 99.6992 | 79.9741 | 6630 | 27 | 6628 | 20 | 11 | 55.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | * | homalt | 99.2348 | 99.6454 | 98.8277 | 68.4541 | 1686 | 6 | 1686 | 20 | 16 | 80.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9650 | 99.5196 | 98.4165 | 72.8445 | 1243 | 6 | 1243 | 20 | 16 | 80.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9650 | 99.5196 | 98.4165 | 72.8445 | 1243 | 6 | 1243 | 20 | 16 | 80.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.4946 | 94.4444 | 98.6357 | 82.7265 | 1445 | 85 | 1446 | 20 | 12 | 60.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.4946 | 94.4444 | 98.6357 | 82.7265 | 1445 | 85 | 1446 | 20 | 12 | 60.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_siren | * | 98.8981 | 98.4692 | 99.3307 | 78.4555 | 2959 | 46 | 2968 | 20 | 3 | 15.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m1_e0 | homalt | 99.5567 | 99.3365 | 99.7779 | 62.4922 | 8983 | 60 | 8983 | 20 | 18 | 90.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | homalt | 99.5649 | 99.3488 | 99.7820 | 64.8909 | 9154 | 60 | 9154 | 20 | 18 | 90.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e1 | homalt | 99.5691 | 99.3550 | 99.7841 | 64.9074 | 9242 | 60 | 9242 | 20 | 18 | 90.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.5775 | 66.5710 | 95.8678 | 49.7925 | 464 | 233 | 464 | 20 | 18 | 90.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_siren | * | 99.3769 | 99.3199 | 99.4339 | 78.1455 | 3505 | 24 | 3513 | 20 | 5 | 25.0000 | |
| jlack-gatk | INDEL | * | func_cds | * | 97.6994 | 99.7753 | 95.7082 | 54.1790 | 444 | 1 | 446 | 20 | 1 | 5.0000 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5173 | 99.5860 | 99.4487 | 75.8037 | 3608 | 15 | 3608 | 20 | 9 | 45.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.2345 | 95.7792 | 96.6942 | 67.4731 | 590 | 26 | 585 | 20 | 16 | 80.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_siren | * | 89.0690 | 91.6084 | 86.6667 | 94.5750 | 131 | 12 | 130 | 20 | 3 | 15.0000 | |
| jlack-gatk | INDEL | D6_15 | HG002complexvar | homalt | 99.0234 | 99.7434 | 98.3137 | 61.3807 | 1166 | 3 | 1166 | 20 | 19 | 95.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.0510 | 98.2298 | 99.8861 | 53.8211 | 17535 | 316 | 17534 | 20 | 1 | 5.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m0_e0 | het | 97.0435 | 97.5524 | 96.5398 | 93.4041 | 558 | 14 | 558 | 20 | 1 | 5.0000 | |
| hfeng-pmm3 | INDEL | * | map_l100_m0_e0 | het | 98.1428 | 98.2370 | 98.0488 | 85.0974 | 1003 | 18 | 1005 | 20 | 2 | 10.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.6271 | 96.4286 | 98.8558 | 65.7524 | 1728 | 64 | 1728 | 20 | 18 | 90.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.0004 | 93.9245 | 96.1014 | 81.4130 | 572 | 37 | 493 | 20 | 18 | 90.0000 | |
| hfeng-pmm1 | SNP | ti | map_l250_m0_e0 | het | 97.9133 | 97.9657 | 97.8610 | 93.2569 | 915 | 19 | 915 | 20 | 3 | 15.0000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m1_e0 | het | 98.1685 | 97.4818 | 98.8649 | 87.9315 | 1742 | 45 | 1742 | 20 | 2 | 10.0000 | |
| hfeng-pmm2 | INDEL | * | map_l150_m0_e0 | * | 97.3151 | 98.4436 | 96.2121 | 92.3077 | 506 | 8 | 508 | 20 | 4 | 20.0000 | |
| hfeng-pmm2 | INDEL | * | segdup | * | 99.0994 | 98.9828 | 99.2163 | 94.4475 | 2530 | 26 | 2532 | 20 | 4 | 20.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.6913 | 98.9198 | 98.4639 | 87.5787 | 1282 | 14 | 1282 | 20 | 9 | 45.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.5658 | 99.5452 | 99.5863 | 69.3755 | 4815 | 22 | 4815 | 20 | 10 | 50.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6292 | 99.7696 | 99.4893 | 34.4273 | 3897 | 9 | 3896 | 20 | 3 | 15.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.1997 | 98.5761 | 97.8261 | 89.4229 | 900 | 13 | 900 | 20 | 13 | 65.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8488 | 99.8809 | 99.8167 | 61.3691 | 10898 | 13 | 10894 | 20 | 5 | 25.0000 | |
| jli-custom | INDEL | * | map_l150_m1_e0 | * | 98.3164 | 98.1315 | 98.5019 | 88.5230 | 1313 | 25 | 1315 | 20 | 7 | 35.0000 | |