PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
1901-1950 / 86044 show all
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
71.6772
70.5040
72.8901
52.2851
42811791480217861566
87.6820
ghariani-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.4227
98.4802
90.6863
72.2353
1730126717390178611
0.6159
gduggal-snapfbSNP*map_l100_m2_e1*
97.7287
97.8404
97.6173
69.6430
731231614731291785689
38.5994
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
19.1559
90.9502
10.7054
81.4012
20120214178528
1.5686
mlin-fermikitSNPtvHG002complexvarhomalt
98.2029
98.2799
98.1261
24.4893
9347516369347117851729
96.8627
gduggal-bwavardINDELD1_5HG002complexvarhet
94.9162
98.4397
91.6362
58.2975
204413241954617841236
69.2825
bgallagher-sentieonSNPtv**
99.8908
99.9655
99.8163
21.9055
969355335969269178478
4.3722
mlin-fermikitSNPtimap_l125_m2_e1homalt
67.0382
58.2650
78.9219
57.4454
66764782667617831698
95.2328
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
82.5030
79.8704
85.3152
53.3915
88722236103531782570
31.9865
gduggal-snapfbSNP*map_l100_m2_e0*
97.7110
97.8206
97.6017
69.6113
723521612723581778689
38.7514
gduggal-snapvardSNPtimap_l125_m0_e0*
90.9915
95.2045
87.1355
81.6073
12150612120431778144
8.0990
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
86.9120
84.3420
89.6435
36.7917
1540028591539017781740
97.8628
egarrison-hhgaINDELD6_15HG002compoundhet*
61.1341
52.4527
73.2591
39.3063
47374294487117781713
96.3442
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
78.5618
72.3842
85.8922
52.6470
1070240831082517781586
89.2013
mlin-fermikitINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
86.2115
84.1466
88.3803
58.2216
1350325441351617771745
98.1992
gduggal-snapfbINDELD1_5*homalt
97.4626
98.4998
96.4470
62.9841
481927344823717771307
73.5509
rpoplin-dv42INDEL*HG002compoundhet*
93.3591
92.7336
93.9930
68.4001
2778321772775817741747
98.4780
gduggal-snapfbINDELI1_5HG002complexvarhet
93.2070
95.4203
91.0940
55.8992
17356833181351773467
26.3395
ciseli-customSNP*map_l250_m2_e1*
69.2947
64.8053
74.4524
92.2088
5176281151671773350
19.7406
gduggal-snapplatSNPtimap_siren*
97.1306
96.0829
98.2013
65.7243
964243931964731767855
48.3871
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
42.2807
34.7724
53.9244
82.6368
178033392068176759
3.3390
gduggal-snapplatSNP*map_l125_m2_e1*
94.0312
92.0554
96.0937
81.8790
434523750434681767944
53.4239
mlin-fermikitSNPtimap_l125_m2_e0homalt
66.8459
58.0120
78.8535
57.3303
65894769658917671683
95.2462
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_11to50*
92.1428
89.6098
94.8232
41.9297
3279038023234817661366
77.3499
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
76.0331
67.0590
87.7802
43.4475
1185058211268617661744
98.7542
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
76.0331
67.0590
87.7802
43.4475
1185058211268617661744
98.7542
jlack-gatkSNPtvmap_l100_m2_e1*
96.2124
99.1773
93.4195
77.4540
25075208250711766100
5.6625
jlack-gatkSNPtvmap_l100_m2_e0*
96.1775
99.1691
93.3612
77.4337
24825208248211765100
5.6657
jpowers-varprowlSNPti*homalt
99.8713
99.9620
99.7807
18.3988
80273330580278417641014
57.4830
jpowers-varprowlSNP*map_siren*
98.5825
98.3751
98.7907
60.8110
14385223761438551761441
25.0426
gduggal-snapfbSNP*map_l100_m1_e0*
97.6767
97.7805
97.5731
67.6748
707961607708021761688
39.0687
ghariani-varprowlSNP*map_l100_m2_e1*
98.3564
99.0460
97.6764
72.0101
74024713740271761324
18.3986
gduggal-snapplatSNP*map_l125_m2_e0*
93.9886
91.9975
96.0678
81.8481
429843739429991760941
53.4659
gduggal-snapvardSNPtimap_l125_m0_e0het
88.1418
95.6916
81.6961
84.2040
790735678511759129
7.3337
anovak-vgSNPtimap_l250_m2_e1*
75.8245
82.3089
70.2872
91.6096
417889841611759398
22.6265
ciseli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
82.5695
96.6091
72.0927
44.6474
45301594544175924
1.3644
ciseli-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
92.4417
95.1488
89.8844
58.8124
15632797156301759720
40.9323
ndellapenna-hhgaINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
80.6222
79.0628
82.2442
83.6336
79642109814317581536
87.3720
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
80.5000
97.2526
68.6708
63.3133
38231083849175613
0.7403
ciseli-customSNP*map_l250_m2_e0*
69.1818
64.6798
74.3575
92.1767
5100278550921756343
19.5330
ciseli-customSNPtimap_l100_m0_e0het
78.5726
72.8313
85.2966
78.4054
10184379910181175557
3.2479
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
75.5526
81.0392
70.7618
54.7757
5599131042451754345
19.6693
bgallagher-sentieonSNPtv*het
99.8318
99.9594
99.7045
23.0898
591456240591385175353
3.0234
jpowers-varprowlSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.8391
98.7777
96.9182
66.3842
54951680551301753575
32.8009
mlin-fermikitINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
73.6558
85.1238
64.9109
67.0798
3439601324117521680
95.8904
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
77.5469
65.0258
96.0400
78.6649
4249522856424901752879
50.1712
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
77.5469
65.0258
96.0400
78.6649
4249522856424901752879
50.1712
jlack-gatkSNPtvmap_l100_m2_e1het
94.4530
99.3286
90.0336
81.3037
1583110715827175290
5.1370
anovak-vgSNPtimap_l250_m2_e1het
72.2384
86.6323
61.9461
92.2704
285844128521752393
22.4315
jlack-gatkSNPtvmap_l100_m2_e0het
94.4020
99.3218
89.9466
81.2769
1567010715666175190
5.1399