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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 366 367 368 369 370 371 372 373 374 ... 1720 1721 » 18451-18500 / 86044 show all
gduggal-snapfb	SNP	ti	map_l100_m0_e0	homalt	97.3012	95.0733	99.6360	73.4569	7391	383	7391	27	15	55.5556
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	43.7439	31.3305	72.4490	90.3733	73	160	71	27	10	37.0370
gduggal-snapfb	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	90.9276	91.7603	90.1099	64.2202	245	22	246	27	5	18.5185
gduggal-snapfb	INDEL	I1_5	map_l125_m1_e0	het	95.1089	95.6790	94.5455	85.1619	465	21	468	27	3	11.1111
gduggal-snapfb	INDEL	I1_5	map_l125_m2_e0	het	95.2161	95.7746	94.6640	86.7331	476	21	479	27	3	11.1111
gduggal-snapfb	INDEL	I1_5	map_l125_m2_e1	het	95.3187	95.8661	94.7776	86.8347	487	21	490	27	3	11.1111
gduggal-snapfb	INDEL	I1_5	map_l150_m2_e1	*	95.4029	95.8569	94.9533	91.2223	509	22	508	27	7	25.9259
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	40.9756	28.1879	75.0000	50.6849	42	107	81	27	27	100.0000
ciseli-custom	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	homalt	42.5532	100.0000	27.0270	90.7500	6	0	10	27	1	3.7037
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.4690	95.5993	99.4132	24.4623	4562	210	4574	27	27	100.0000
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.0809	94.7303	99.5510	41.4525	1528	85	5987	27	23	85.1852
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.0168	97.1706	98.8778	83.5902	2301	67	2379	27	22	81.4815
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.6397	99.6465	99.6329	33.8966	7329	26	7327	27	8	29.6296
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.5568	99.6967	99.4174	37.3360	4602	14	4607	27	8	29.6296
ciseli-custom	INDEL	C16_PLUS	HG002complexvar	homalt	0.0000	0.0000	22.8571	92.8279	0	0	8	27	15	55.5556
ckim-dragen	INDEL	D16_PLUS	map_l100_m2_e0	*	82.4121	91.1111	75.2294	95.6746	82	8	82	27	4	14.8148
ckim-dragen	INDEL	D1_5	map_l150_m2_e0	*	96.9967	97.5098	96.4889	90.2658	744	19	742	27	3	11.1111
ckim-dragen	INDEL	D1_5	map_l150_m2_e1	het	96.2144	97.5096	94.9533	90.7487	509	13	508	27	2	7.4074
ckim-dragen	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4656	99.3773	99.5540	78.3693	6064	38	6027	27	7	25.9259
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	97.5150	99.6497	95.4698	67.0354	569	2	569	27	27	100.0000
ckim-dragen	INDEL	I1_5	map_l100_m1_e0	het	96.1240	95.7529	96.4981	85.9049	744	33	744	27	3	11.1111
ckim-dragen	INDEL	I1_5	map_l100_m2_e0	het	96.2025	95.8386	96.5693	87.1089	760	33	760	27	3	11.1111
ckim-dragen	INDEL	I1_5	map_l100_m2_e1	het	96.2825	95.9259	96.6418	87.1729	777	33	777	27	3	11.1111
ckim-dragen	SNP	*	map_l100_m0_e0	homalt	99.4909	99.2169	99.7664	57.4442	11529	91	11532	27	24	88.8889
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.2554	98.9184	99.5947	75.9330	6585	72	6635	27	13	48.1481
cchapple-custom	INDEL	*	map_l250_m1_e0	*	93.3027	95.0820	91.5888	95.3992	290	15	294	27	3	11.1111
cchapple-custom	INDEL	*	map_l250_m2_e0	het	91.3070	94.2857	88.5106	96.0027	198	12	208	27	2	7.4074
cchapple-custom	INDEL	*	map_l250_m2_e1	het	91.3456	94.3128	88.5593	96.0927	199	12	209	27	2	7.4074
cchapple-custom	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	0.0000	0.0000	74.7664	96.5316	0	0	80	27	2	7.4074
cchapple-custom	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	0.0000	0.0000	77.8689	96.2531	0	0	95	27	1	3.7037
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	78.2609	88.7324	70.0000	29.1339	63	8	63	27	27	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.3424	98.7673	95.9581	68.3562	641	8	641	27	27	100.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.4104	99.4573	99.3635	79.6751	4215	23	4215	27	8	29.6296
ciseli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	homalt	71.4286	88.8889	59.7015	47.6562	40	5	40	27	26	96.2963
ciseli-custom	INDEL	D6_15	map_l125_m2_e0	het	57.4870	54.9296	60.2941	93.6685	39	32	41	27	5	18.5185
ciseli-custom	INDEL	D6_15	map_l125_m2_e1	het	57.4870	54.9296	60.2941	93.7672	39	32	41	27	5	18.5185
ciseli-custom	INDEL	I6_15	segdup	*	43.2432	32.0000	66.6667	89.6021	56	119	54	27	25	92.5926
anovak-vg	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	34.1463	100.0000	20.5882	69.9115	1	0	7	27	22	81.4815
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	60.8696	77.7778	50.0000	52.2124	28	8	27	27	21	77.7778
anovak-vg	INDEL	I6_15	segdup	het	38.0775	28.9157	55.7377	91.0688	24	59	34	27	13	48.1481
anovak-vg	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	97.9774	97.8472	98.1079	69.1926	1409	31	1400	27	11	40.7407
anovak-vg	SNP	tv	map_l150_m1_e0	homalt	87.3069	78.0030	99.1307	71.3389	3078	868	3079	27	20	74.0741
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8087	99.7134	99.9043	58.1701	28179	81	28181	27	15	55.5556
anovak-vg	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	66.4196	55.6522	82.3529	58.1967	128	102	126	27	19	70.3704
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	22.7920	22.7273	22.8571	61.5385	5	17	8	27	15	55.5556
astatham-gatk	SNP	ti	map_l250_m1_e0	het	89.5242	81.7722	98.8998	92.0567	2427	541	2427	27	9	33.3333
astatham-gatk	SNP	ti	map_l250_m2_e0	het	89.3237	81.3768	98.9907	92.3822	2648	606	2648	27	9	33.3333
astatham-gatk	SNP	ti	map_l250_m2_e1	het	89.3914	81.4792	99.0055	92.4310	2688	611	2688	27	9	33.3333
astatham-gatk	SNP	tv	map_l125_m0_e0	het	90.1921	82.6403	99.2629	82.5538	3637	764	3636	27	5	18.5185
asubramanian-gatk	INDEL	C16_PLUS	*	homalt		0.0000	0.0000	84.2105	0	0	0	27	0	0.0000

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