PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18351-18400 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8033 | 98.0989 | 99.5179 | 50.4556 | 5573 | 108 | 5573 | 27 | 24 | 88.8889 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.7503 | 87.5000 | 90.0369 | 78.1275 | 252 | 36 | 244 | 27 | 25 | 92.5926 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7162 | 99.7111 | 99.7214 | 67.6049 | 9664 | 28 | 9664 | 27 | 20 | 74.0741 | |
| rpoplin-dv42 | SNP | ti | map_l125_m2_e0 | homalt | 99.5456 | 99.3309 | 99.7613 | 68.8663 | 11282 | 76 | 11282 | 27 | 26 | 96.2963 | |
| rpoplin-dv42 | SNP | ti | map_l125_m2_e1 | homalt | 99.5496 | 99.3367 | 99.7633 | 68.9111 | 11382 | 76 | 11382 | 27 | 26 | 96.2963 | |
| raldana-dualsentieon | SNP | tv | * | homalt | 99.9865 | 99.9801 | 99.9928 | 19.7814 | 377048 | 75 | 377042 | 27 | 21 | 77.7778 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 92.7288 | 90.2597 | 95.3368 | 64.7810 | 556 | 60 | 552 | 27 | 25 | 92.5926 | |
| rpoplin-dv42 | SNP | tv | segdup | * | 99.6835 | 99.6835 | 99.6834 | 91.0590 | 8505 | 27 | 8501 | 27 | 12 | 44.4444 | |
| hfeng-pmm3 | SNP | tv | map_l150_m0_e0 | het | 98.8723 | 98.6986 | 99.0466 | 80.7883 | 2806 | 37 | 2805 | 27 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m1_e0 | * | 98.7121 | 98.4511 | 98.9746 | 87.8091 | 2606 | 41 | 2606 | 27 | 4 | 14.8148 | |
| jlack-gatk | INDEL | * | map_l250_m0_e0 | * | 82.6816 | 94.8718 | 73.2673 | 98.2753 | 74 | 4 | 74 | 27 | 1 | 3.7037 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.6126 | 98.8520 | 98.3745 | 60.9084 | 1636 | 19 | 1634 | 27 | 12 | 44.4444 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e1 | * | 92.3351 | 94.1818 | 90.5594 | 88.7090 | 259 | 16 | 259 | 27 | 5 | 18.5185 | |
| jlack-gatk | INDEL | I16_PLUS | HG002complexvar | * | 97.1912 | 96.4859 | 97.9070 | 66.9992 | 1263 | 46 | 1263 | 27 | 23 | 85.1852 | |
| hfeng-pmm2 | SNP | * | map_l125_m0_e0 | homalt | 99.6276 | 99.6573 | 99.5980 | 70.8911 | 6689 | 23 | 6689 | 27 | 10 | 37.0370 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2862 | 98.9399 | 99.6350 | 37.4196 | 7373 | 79 | 7370 | 27 | 2 | 7.4074 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5833 | 96.4750 | 98.7173 | 74.8085 | 2080 | 76 | 2078 | 27 | 9 | 33.3333 | |
| hfeng-pmm3 | INDEL | * | map_l125_m1_e0 | * | 98.6235 | 98.5287 | 98.7186 | 85.1274 | 2076 | 31 | 2080 | 27 | 6 | 22.2222 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.8671 | 89.7394 | 98.3929 | 66.3731 | 1653 | 189 | 1653 | 27 | 15 | 55.5556 | |
| hfeng-pmm3 | INDEL | I6_15 | HG002compoundhet | het | 81.1158 | 79.8077 | 82.4675 | 86.8038 | 166 | 42 | 127 | 27 | 25 | 92.5926 | |
| hfeng-pmm3 | SNP | * | map_l100_m0_e0 | homalt | 99.7288 | 99.6902 | 99.7675 | 63.7304 | 11584 | 36 | 11584 | 27 | 10 | 37.0370 | |
| hfeng-pmm3 | SNP | * | map_l150_m1_e0 | homalt | 99.7427 | 99.7250 | 99.7604 | 71.2100 | 11242 | 31 | 11242 | 27 | 10 | 37.0370 | |
| hfeng-pmm3 | SNP | * | map_l150_m2_e0 | homalt | 99.7521 | 99.7350 | 99.7691 | 73.4090 | 11668 | 31 | 11668 | 27 | 10 | 37.0370 | |
| hfeng-pmm3 | SNP | * | map_l150_m2_e1 | homalt | 99.7548 | 99.7379 | 99.7716 | 73.4338 | 11796 | 31 | 11796 | 27 | 10 | 37.0370 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.4993 | 94.2786 | 98.8271 | 62.5995 | 2274 | 138 | 2275 | 27 | 22 | 81.4815 | |
| hfeng-pmm1 | SNP | * | map_l100_m0_e0 | homalt | 99.7374 | 99.7074 | 99.7675 | 63.8562 | 11586 | 34 | 11586 | 27 | 10 | 37.0370 | |
| hfeng-pmm1 | SNP | * | map_l150_m1_e0 | homalt | 99.7516 | 99.7427 | 99.7604 | 71.3075 | 11244 | 29 | 11244 | 27 | 10 | 37.0370 | |
| hfeng-pmm1 | SNP | * | map_l150_m2_e0 | homalt | 99.7606 | 99.7521 | 99.7692 | 73.4870 | 11670 | 29 | 11670 | 27 | 10 | 37.0370 | |
| hfeng-pmm1 | SNP | * | map_l150_m2_e1 | homalt | 99.7632 | 99.7548 | 99.7717 | 73.5145 | 11798 | 29 | 11798 | 27 | 10 | 37.0370 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5604 | 97.4488 | 99.6975 | 72.9214 | 8900 | 233 | 8900 | 27 | 5 | 18.5185 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5604 | 97.4488 | 99.6975 | 72.9214 | 8900 | 233 | 8900 | 27 | 5 | 18.5185 | |
| hfeng-pmm1 | SNP | tv | segdup | * | 99.7305 | 99.7773 | 99.6837 | 90.5181 | 8513 | 19 | 8509 | 27 | 6 | 22.2222 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.8847 | 89.4650 | 98.7637 | 56.1710 | 2157 | 254 | 2157 | 27 | 25 | 92.5926 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.3151 | 99.0809 | 97.5610 | 86.3283 | 1078 | 10 | 1080 | 27 | 4 | 14.8148 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.3954 | 99.1251 | 97.6764 | 86.9350 | 1133 | 10 | 1135 | 27 | 4 | 14.8148 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e1 | * | 98.4147 | 99.1357 | 97.7041 | 87.0012 | 1147 | 10 | 1149 | 27 | 4 | 14.8148 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 62.3434 | 46.3628 | 95.1351 | 82.5307 | 529 | 612 | 528 | 27 | 19 | 70.3704 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 79.6774 | 71.3873 | 90.1460 | 83.5435 | 247 | 99 | 247 | 27 | 5 | 18.5185 | |
| gduggal-bwaplat | SNP | tv | map_l150_m2_e0 | * | 67.9659 | 51.5984 | 99.5413 | 91.9142 | 5859 | 5496 | 5859 | 27 | 5 | 18.5185 | |
| gduggal-bwaplat | SNP | tv | map_l150_m2_e0 | het | 72.7336 | 57.3635 | 99.3551 | 93.0443 | 4160 | 3092 | 4160 | 27 | 5 | 18.5185 | |
| eyeh-varpipe | SNP | tv | map_l250_m0_e0 | het | 97.3196 | 99.3007 | 95.4160 | 94.4664 | 568 | 4 | 562 | 27 | 2 | 7.4074 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 54.2373 | 95.3978 | 0 | 0 | 32 | 27 | 19 | 70.3704 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 27.0270 | 90.4393 | 0 | 0 | 10 | 27 | 15 | 55.5556 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 40.7379 | 29.8780 | 64.0000 | 63.0542 | 49 | 115 | 48 | 27 | 26 | 96.2963 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | * | 64.7096 | 56.6434 | 75.4545 | 82.7316 | 81 | 62 | 83 | 27 | 22 | 81.4815 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1367 | 97.7011 | 94.6215 | 65.4983 | 425 | 10 | 475 | 27 | 10 | 37.0370 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.6390 | 97.8308 | 97.4480 | 69.8833 | 902 | 20 | 1031 | 27 | 12 | 44.4444 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 91.2621 | 100.0000 | 83.9286 | 99.8242 | 1 | 0 | 141 | 27 | 26 | 96.2963 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e1 | * | 76.1809 | 68.1034 | 86.4322 | 76.0241 | 79 | 37 | 172 | 27 | 25 | 92.5926 | |
| gduggal-bwafb | SNP | ti | map_l250_m0_e0 | het | 96.8331 | 96.5739 | 97.0936 | 93.7967 | 902 | 32 | 902 | 27 | 8 | 29.6296 | |