PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18201-18250 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.6910 | 99.5997 | 97.7987 | 75.1563 | 1244 | 5 | 1244 | 28 | 22 | 78.5714 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 91.5531 | 98.2456 | 85.7143 | 96.6701 | 168 | 3 | 168 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 88.8000 | 100.0000 | 79.8561 | 97.0394 | 111 | 0 | 111 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 92.1120 | 98.3696 | 86.6029 | 96.8600 | 181 | 3 | 181 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 89.6296 | 100.0000 | 81.2081 | 97.1866 | 121 | 0 | 121 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 92.1519 | 98.3784 | 86.6667 | 96.9213 | 182 | 3 | 182 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 89.7059 | 100.0000 | 81.3333 | 97.2355 | 122 | 0 | 122 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D6_15 | HG002complexvar | het | 99.0142 | 98.9423 | 99.0862 | 59.4709 | 3087 | 33 | 3036 | 28 | 22 | 78.5714 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.8901 | 95.6863 | 98.1246 | 84.9192 | 1464 | 66 | 1465 | 28 | 18 | 64.2857 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.8901 | 95.6863 | 98.1246 | 84.9192 | 1464 | 66 | 1465 | 28 | 18 | 64.2857 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m1_e0 | * | 97.7394 | 98.7952 | 96.7059 | 89.6278 | 820 | 10 | 822 | 28 | 3 | 10.7143 | |
| ckim-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.8872 | 98.7069 | 99.0682 | 69.8958 | 2977 | 39 | 2977 | 28 | 9 | 32.1429 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.5417 | 99.5043 | 99.5791 | 77.6913 | 6624 | 33 | 6624 | 28 | 9 | 32.1429 | |
| ckim-gatk | SNP | tv | func_cds | * | 99.5776 | 99.7941 | 99.3620 | 38.5208 | 4362 | 9 | 4361 | 28 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | func_cds | het | 99.4192 | 99.8871 | 98.9556 | 44.4352 | 2654 | 3 | 2653 | 28 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 81.5850 | 69.5556 | 98.6454 | 38.9545 | 1894 | 829 | 2039 | 28 | 23 | 82.1429 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 34.7933 | 24.1573 | 62.1622 | 74.0351 | 43 | 135 | 46 | 28 | 27 | 96.4286 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 80.4196 | 96.5011 | 0 | 0 | 115 | 28 | 2 | 7.1429 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.7963 | 98.1618 | 97.4335 | 57.5156 | 1068 | 20 | 1063 | 28 | 24 | 85.7143 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1585 | 96.0784 | 98.2630 | 83.6495 | 1470 | 60 | 1584 | 28 | 20 | 71.4286 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1585 | 96.0784 | 98.2630 | 83.6495 | 1470 | 60 | 1584 | 28 | 20 | 71.4286 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.1753 | 97.7901 | 88.9764 | 85.5927 | 354 | 8 | 226 | 28 | 26 | 92.8571 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.3335 | 93.6712 | 99.1515 | 51.7685 | 3271 | 221 | 3272 | 28 | 23 | 82.1429 | |
| hfeng-pmm3 | SNP | * | map_l250_m0_e0 | het | 98.0731 | 98.0080 | 98.1383 | 92.9489 | 1476 | 30 | 1476 | 28 | 1 | 3.5714 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.8112 | 94.2777 | 99.4846 | 58.4823 | 5404 | 328 | 5405 | 28 | 21 | 75.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 94.8813 | 98.3871 | 91.6168 | 91.9265 | 305 | 5 | 306 | 28 | 2 | 7.1429 | |
| jlack-gatk | SNP | * | map_l100_m1_e0 | homalt | 99.3858 | 98.8816 | 99.8952 | 58.5121 | 26701 | 302 | 26701 | 28 | 22 | 78.5714 | |
| jlack-gatk | SNP | * | map_l100_m2_e0 | homalt | 99.3957 | 98.8991 | 99.8972 | 61.0320 | 27220 | 303 | 27220 | 28 | 22 | 78.5714 | |
| jlack-gatk | SNP | * | map_l100_m2_e1 | homalt | 99.3962 | 98.8991 | 99.8982 | 60.9989 | 27490 | 306 | 27490 | 28 | 22 | 78.5714 | |
| jlack-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.7667 | 98.9130 | 98.6207 | 68.3258 | 2002 | 22 | 2002 | 28 | 5 | 17.8571 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2911 | 99.8620 | 98.7267 | 65.1671 | 2171 | 3 | 2171 | 28 | 1 | 3.5714 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.9286 | 99.8558 | 98.0184 | 66.5562 | 1385 | 2 | 1385 | 28 | 1 | 3.5714 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.0024 | 99.9306 | 98.0913 | 69.9262 | 1439 | 1 | 1439 | 28 | 1 | 3.5714 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.4914 | 100.0000 | 97.0276 | 71.0154 | 914 | 0 | 914 | 28 | 1 | 3.5714 | |
| hfeng-pmm2 | SNP | * | map_l100_m0_e0 | homalt | 99.7504 | 99.7418 | 99.7590 | 63.9103 | 11590 | 30 | 11590 | 28 | 11 | 39.2857 | |
| hfeng-pmm2 | SNP | * | map_l150_m1_e0 | homalt | 99.7650 | 99.7782 | 99.7517 | 71.3283 | 11248 | 25 | 11248 | 28 | 11 | 39.2857 | |
| hfeng-pmm2 | SNP | * | map_l150_m2_e0 | homalt | 99.7735 | 99.7863 | 99.7607 | 73.5081 | 11674 | 25 | 11674 | 28 | 11 | 39.2857 | |
| hfeng-pmm2 | SNP | * | map_l150_m2_e1 | homalt | 99.7760 | 99.7886 | 99.7633 | 73.5353 | 11802 | 25 | 11802 | 28 | 11 | 39.2857 | |
| hfeng-pmm2 | SNP | ti | map_l250_m0_e0 | het | 97.6596 | 98.2869 | 97.0402 | 94.0240 | 918 | 16 | 918 | 28 | 3 | 10.7143 | |
| hfeng-pmm3 | INDEL | * | map_l100_m0_e0 | * | 98.2754 | 98.3365 | 98.2143 | 84.4120 | 1537 | 26 | 1540 | 28 | 6 | 21.4286 | |
| hfeng-pmm3 | INDEL | * | map_l100_m1_e0 | het | 98.5219 | 98.2998 | 98.7450 | 82.8675 | 2197 | 38 | 2203 | 28 | 5 | 17.8571 | |
| hfeng-pmm3 | INDEL | * | map_l125_m2_e0 | * | 98.5876 | 98.4517 | 98.7238 | 86.1051 | 2162 | 34 | 2166 | 28 | 6 | 21.4286 | |
| hfeng-pmm3 | INDEL | * | map_l125_m2_e1 | * | 98.5832 | 98.4270 | 98.7399 | 86.2184 | 2190 | 35 | 2194 | 28 | 6 | 21.4286 | |
| hfeng-pmm2 | INDEL | I16_PLUS | * | het | 98.4237 | 97.9029 | 98.9501 | 74.4344 | 2661 | 57 | 2639 | 28 | 4 | 14.2857 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.1998 | 96.7133 | 99.7327 | 79.6799 | 10446 | 355 | 10447 | 28 | 3 | 10.7143 | |
| hfeng-pmm1 | INDEL | D1_5 | HG002complexvar | * | 99.1888 | 98.4747 | 99.9133 | 56.8376 | 32216 | 499 | 32267 | 28 | 18 | 64.2857 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.2911 | 97.7633 | 98.8245 | 75.3849 | 2404 | 55 | 2354 | 28 | 12 | 42.8571 | |
| hfeng-pmm1 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1579 | 98.4076 | 99.9197 | 59.2367 | 34855 | 564 | 34845 | 28 | 5 | 17.8571 | |
| hfeng-pmm1 | SNP | ti | map_siren | homalt | 99.9011 | 99.8760 | 99.9261 | 52.1075 | 37869 | 47 | 37865 | 28 | 18 | 64.2857 | |
| hfeng-pmm1 | SNP | tv | HG002complexvar | het | 99.7636 | 99.5469 | 99.9813 | 20.8221 | 150048 | 683 | 149969 | 28 | 9 | 32.1429 | |