PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18051-18100 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2455 | 99.2320 | 99.2591 | 40.7060 | 3876 | 30 | 3885 | 29 | 10 | 34.4828 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.1710 | 86.1140 | 99.1445 | 49.6360 | 3293 | 531 | 3361 | 29 | 28 | 96.5517 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.5721 | 99.2498 | 99.8965 | 56.0085 | 28048 | 212 | 27998 | 29 | 16 | 55.1724 | |
| ltrigg-rtg1 | SNP | * | map_l100_m2_e0 | homalt | 99.8182 | 99.7420 | 99.8945 | 62.4790 | 27452 | 71 | 27451 | 29 | 26 | 89.6552 | |
| ltrigg-rtg1 | SNP | * | map_l100_m2_e1 | homalt | 99.8200 | 99.7446 | 99.8955 | 62.4711 | 27725 | 71 | 27724 | 29 | 26 | 89.6552 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e0 | het | 98.4904 | 97.2440 | 99.7691 | 66.6179 | 12526 | 355 | 12529 | 29 | 5 | 17.2414 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.3619 | 93.9050 | 96.8649 | 73.4043 | 909 | 59 | 896 | 29 | 7 | 24.1379 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m1_e0 | het | 97.4629 | 96.2864 | 98.6685 | 76.9451 | 2152 | 83 | 2149 | 29 | 2 | 6.8966 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.6877 | 98.2028 | 99.1775 | 66.2939 | 3497 | 64 | 3497 | 29 | 23 | 79.3103 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.7854 | 98.9446 | 92.8218 | 59.3152 | 375 | 4 | 375 | 29 | 29 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.3497 | 99.9156 | 98.7902 | 51.5758 | 2368 | 2 | 2368 | 29 | 29 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.4972 | 93.5639 | 99.6204 | 24.2463 | 7574 | 521 | 7610 | 29 | 29 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.4599 | 93.4908 | 99.6237 | 26.2417 | 7641 | 532 | 7678 | 29 | 29 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m0_e0 | het | 92.5894 | 98.5149 | 87.3362 | 94.7966 | 199 | 3 | 200 | 29 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | HG002complexvar | het | 98.8845 | 98.7179 | 99.0517 | 59.4483 | 3080 | 40 | 3029 | 29 | 25 | 86.2069 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e1 | * | 97.6702 | 98.6207 | 96.7379 | 90.7511 | 858 | 12 | 860 | 29 | 3 | 10.3448 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.8277 | 100.0000 | 95.7478 | 73.3906 | 653 | 0 | 653 | 29 | 28 | 96.5517 | |
| jmaeng-gatk | SNP | ti | HG002complexvar | homalt | 99.3419 | 98.7072 | 99.9848 | 18.4737 | 190962 | 2501 | 190952 | 29 | 26 | 89.6552 | |
| jpowers-varprowl | INDEL | * | func_cds | * | 91.7808 | 90.3371 | 93.2715 | 40.6336 | 402 | 43 | 402 | 29 | 28 | 96.5517 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 21.4286 | 19.5652 | 23.6842 | 60.8247 | 9 | 37 | 9 | 29 | 29 | 100.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6527 | 99.7736 | 99.5322 | 54.5761 | 6170 | 14 | 6170 | 29 | 0 | 0.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4669 | 99.6693 | 99.2653 | 55.9536 | 3918 | 13 | 3918 | 29 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | map_l150_m2_e1 | * | 97.9875 | 97.9847 | 97.9903 | 91.3313 | 1410 | 29 | 1414 | 29 | 7 | 24.1379 | |
| egarrison-hhga | INDEL | * | map_siren | homalt | 98.7934 | 98.6817 | 98.9052 | 79.7136 | 2620 | 35 | 2620 | 29 | 20 | 68.9655 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7987 | 99.8821 | 99.7155 | 54.3488 | 10166 | 12 | 10164 | 29 | 24 | 82.7586 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e1 | het | 98.0355 | 98.3438 | 97.7291 | 83.2875 | 1247 | 21 | 1248 | 29 | 8 | 27.5862 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.8086 | 94.8250 | 98.8768 | 51.0057 | 2547 | 139 | 2553 | 29 | 2 | 6.8966 | |
| ckim-isaac | SNP | ti | HG002compoundhet | homalt | 91.0386 | 83.8788 | 99.5347 | 26.2921 | 6202 | 1192 | 6203 | 29 | 24 | 82.7586 | |
| ckim-isaac | SNP | ti | map_l100_m0_e0 | * | 75.5708 | 60.8148 | 99.7815 | 66.9687 | 13240 | 8531 | 13241 | 29 | 6 | 20.6897 | |
| ckim-isaac | SNP | ti | map_l150_m2_e0 | * | 72.1859 | 56.5571 | 99.7506 | 77.5984 | 11601 | 8911 | 11601 | 29 | 5 | 17.2414 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.9052 | 96.1507 | 99.7250 | 58.1999 | 10491 | 420 | 10518 | 29 | 27 | 93.1034 | |
| ckim-isaac | SNP | tv | map_l125_m1_e0 | * | 70.3696 | 54.3831 | 99.6682 | 71.7978 | 8710 | 7306 | 8712 | 29 | 9 | 31.0345 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6915 | 99.4869 | 99.8970 | 58.9754 | 28115 | 145 | 28118 | 29 | 17 | 58.6207 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.6223 | 93.7986 | 99.6213 | 24.3454 | 7593 | 502 | 7628 | 29 | 29 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.5969 | 93.7477 | 99.6247 | 26.3674 | 7662 | 511 | 7698 | 29 | 29 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m1_e0 | het | 94.8621 | 95.6432 | 94.0937 | 93.3890 | 461 | 21 | 462 | 29 | 3 | 10.3448 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.9709 | 95.0352 | 98.9871 | 50.1046 | 2833 | 148 | 2834 | 29 | 24 | 82.7586 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.5453 | 100.0000 | 91.4706 | 70.3833 | 311 | 0 | 311 | 29 | 28 | 96.5517 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 91.6849 | 87.6214 | 96.1436 | 66.2478 | 722 | 102 | 723 | 29 | 8 | 27.5862 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.8528 | 88.9193 | 99.3658 | 31.1088 | 4550 | 567 | 4544 | 29 | 25 | 86.2069 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 90.4376 | 83.7686 | 98.2603 | 35.1614 | 1636 | 317 | 1638 | 29 | 15 | 51.7241 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 94.6365 | 93.5989 | 95.6973 | 34.7531 | 658 | 45 | 645 | 29 | 24 | 82.7586 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 93.0591 | 87.6396 | 99.1931 | 21.1150 | 3531 | 498 | 3565 | 29 | 24 | 82.7586 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 71.9593 | 58.1340 | 94.4123 | 59.6109 | 486 | 350 | 490 | 29 | 18 | 62.0690 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 93.9099 | 89.5234 | 98.7484 | 34.7140 | 2273 | 266 | 2288 | 29 | 28 | 96.5517 | |
| egarrison-hhga | SNP | * | map_l250_m2_e0 | het | 98.3259 | 97.2468 | 99.4291 | 88.5758 | 5051 | 143 | 5051 | 29 | 11 | 37.9310 | |
| egarrison-hhga | SNP | * | map_l250_m2_e1 | het | 98.3289 | 97.2454 | 99.4367 | 88.6583 | 5119 | 145 | 5119 | 29 | 11 | 37.9310 | |
| egarrison-hhga | SNP | tv | map_l125_m1_e0 | het | 99.1809 | 98.6569 | 99.7105 | 68.8561 | 9990 | 136 | 9990 | 29 | 12 | 41.3793 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 72.1154 | 94.9392 | 0 | 0 | 75 | 29 | 27 | 93.1034 | |
| egarrison-hhga | INDEL | * | map_l150_m1_e0 | * | 97.6046 | 97.3842 | 97.8261 | 98.6310 | 1303 | 35 | 1305 | 29 | 10 | 34.4828 | |