PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17851-17900 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9876 | 98.4366 | 99.5448 | 47.2044 | 6611 | 105 | 6561 | 30 | 6 | 20.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.9814 | 98.5171 | 99.4501 | 63.2766 | 5514 | 83 | 5426 | 30 | 9 | 30.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2308 | 97.0167 | 99.4755 | 56.4489 | 5561 | 171 | 5690 | 30 | 15 | 50.0000 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.7008 | 92.5507 | 99.0729 | 30.3936 | 3193 | 257 | 3206 | 30 | 24 | 80.0000 | |
| ckim-isaac | SNP | tv | map_l125_m2_e0 | * | 70.8343 | 54.9397 | 99.6700 | 73.8494 | 9059 | 7430 | 9061 | 30 | 9 | 30.0000 | |
| ckim-isaac | SNP | tv | map_l125_m2_e1 | * | 70.9236 | 55.0459 | 99.6739 | 73.8556 | 9169 | 7488 | 9171 | 30 | 9 | 30.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m1_e0 | * | 96.0363 | 96.2343 | 95.8391 | 92.4668 | 690 | 27 | 691 | 30 | 4 | 13.3333 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m2_e0 | het | 94.7832 | 95.3307 | 94.2418 | 93.7274 | 490 | 24 | 491 | 30 | 3 | 10.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m2_e1 | het | 94.6619 | 95.0192 | 94.3074 | 93.7699 | 496 | 26 | 497 | 30 | 3 | 10.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.8082 | 94.2070 | 99.5571 | 26.7517 | 6700 | 412 | 6744 | 30 | 30 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.7996 | 94.1873 | 99.5608 | 27.3684 | 6757 | 417 | 6801 | 30 | 30 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5070 | 99.8586 | 99.1578 | 72.7530 | 3532 | 5 | 3532 | 30 | 30 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.9523 | 95.2381 | 92.7007 | 57.3209 | 380 | 19 | 381 | 30 | 18 | 60.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 90.2590 | 88.0734 | 92.5558 | 81.8305 | 384 | 52 | 373 | 30 | 15 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | HG002complexvar | hetalt | 96.4786 | 94.7856 | 98.2332 | 69.9256 | 1636 | 90 | 1668 | 30 | 30 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.1550 | 91.2173 | 95.1768 | 58.7259 | 592 | 57 | 592 | 30 | 23 | 76.6667 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.3469 | 96.9970 | 97.6994 | 59.7282 | 1292 | 40 | 1274 | 30 | 17 | 56.6667 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 89.7025 | 92.8910 | 86.7257 | 67.8063 | 196 | 15 | 196 | 30 | 26 | 86.6667 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4422 | 99.5809 | 99.3038 | 58.0347 | 4277 | 18 | 4279 | 30 | 5 | 16.6667 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8850 | 98.5441 | 99.2284 | 79.4839 | 3858 | 57 | 3858 | 30 | 23 | 76.6667 | |
| egarrison-hhga | SNP | ti | map_l100_m0_e0 | het | 99.1363 | 98.4982 | 99.7827 | 69.5619 | 13773 | 210 | 13774 | 30 | 14 | 46.6667 | |
| eyeh-varpipe | INDEL | * | map_l150_m0_e0 | * | 96.3994 | 96.4981 | 96.3009 | 96.8271 | 496 | 18 | 781 | 30 | 19 | 63.3333 | |
| dgrover-gatk | SNP | * | map_siren | homalt | 99.8121 | 99.6791 | 99.9455 | 50.4067 | 54979 | 177 | 54970 | 30 | 26 | 86.6667 | |
| dgrover-gatk | SNP | tv | * | homalt | 99.9813 | 99.9706 | 99.9920 | 19.9848 | 377012 | 111 | 376997 | 30 | 24 | 80.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.4312 | 98.2694 | 98.5935 | 73.2405 | 2101 | 37 | 2103 | 30 | 18 | 60.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 91.9368 | 91.0345 | 92.8571 | 60.6373 | 396 | 39 | 390 | 30 | 18 | 60.0000 | |
| ckim-isaac | INDEL | D6_15 | HG002compoundhet | homalt | 40.0881 | 54.1667 | 31.8182 | 65.3543 | 13 | 11 | 14 | 30 | 29 | 96.6667 | |
| ckim-vqsr | SNP | tv | map_l250_m1_e0 | * | 57.0360 | 40.3476 | 97.2678 | 97.1909 | 1068 | 1579 | 1068 | 30 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | map_l250_m1_e0 | het | 67.2754 | 51.5389 | 96.8454 | 97.1535 | 921 | 866 | 921 | 30 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | segdup | het | 98.9929 | 98.5625 | 99.4272 | 95.9257 | 5211 | 76 | 5207 | 30 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | map_l100_m0_e0 | het | 97.5662 | 98.0411 | 97.0958 | 88.5957 | 1001 | 20 | 1003 | 30 | 4 | 13.3333 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.0680 | 94.6510 | 99.6117 | 25.8826 | 7662 | 433 | 7696 | 30 | 29 | 96.6667 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2264 | 98.9027 | 99.5522 | 39.1407 | 6670 | 74 | 6670 | 30 | 1 | 3.3333 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.1701 | 95.0166 | 99.4235 | 24.0070 | 5167 | 271 | 5174 | 30 | 29 | 96.6667 | |
| rpoplin-dv42 | INDEL | I16_PLUS | * | homalt | 96.6889 | 95.3876 | 98.0263 | 58.4131 | 1489 | 72 | 1490 | 30 | 28 | 93.3333 | |
| rpoplin-dv42 | SNP | * | map_l100_m0_e0 | homalt | 99.3564 | 98.9759 | 99.7398 | 62.7443 | 11501 | 119 | 11501 | 30 | 27 | 90.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.7835 | 87.9479 | 98.1818 | 64.9979 | 1620 | 222 | 1620 | 30 | 27 | 90.0000 | |
| ckim-dragen | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.7380 | 98.1108 | 99.3732 | 66.6039 | 4674 | 90 | 4756 | 30 | 7 | 23.3333 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.7240 | 89.4737 | 98.3983 | 44.3222 | 663 | 78 | 1843 | 30 | 21 | 70.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.1282 | 97.8892 | 92.5187 | 45.3678 | 371 | 8 | 371 | 30 | 24 | 80.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7531 | 99.6254 | 99.8811 | 52.9851 | 25264 | 95 | 25209 | 30 | 21 | 70.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5939 | 97.9738 | 99.2218 | 68.0216 | 3820 | 79 | 3825 | 30 | 15 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 77.3509 | 67.3423 | 90.8537 | 63.9164 | 299 | 145 | 298 | 30 | 27 | 90.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 58.9524 | 49.6815 | 72.4771 | 51.3393 | 78 | 79 | 79 | 30 | 29 | 96.6667 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m1_e0 | het | 62.5799 | 57.6577 | 68.4211 | 97.6398 | 64 | 47 | 65 | 30 | 6 | 20.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e0 | het | 64.0842 | 58.6777 | 70.5882 | 97.7293 | 71 | 50 | 72 | 30 | 6 | 20.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m1_e0 | * | 55.9441 | 54.7945 | 57.1429 | 94.0171 | 40 | 33 | 40 | 30 | 13 | 43.3333 | |
| ciseli-custom | INDEL | I1_5 | func_cds | * | 86.4865 | 88.8889 | 84.2105 | 28.0303 | 160 | 20 | 160 | 30 | 19 | 63.3333 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5873 | 97.9738 | 99.2084 | 62.4678 | 3820 | 79 | 3760 | 30 | 27 | 90.0000 | |
| cchapple-custom | INDEL | I6_15 | HG002complexvar | het | 98.1734 | 97.1975 | 99.1692 | 56.5725 | 2289 | 66 | 3581 | 30 | 25 | 83.3333 | |