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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 341 342 343 344 345 346 347 348 349 ... 1720 1721 » 17201-17250 / 86044 show all
ckim-vqsr	SNP	ti	map_l250_m2_e0	het	69.6152	53.9336	98.1544	97.0778	1755	1499	1755	33	0	0.0000
dgrover-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.9811	96.5062	99.5018	33.8856	6574	238	6591	33	32	96.9697
egarrison-hhga	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	94.4183	93.3511	95.5102	59.6597	702	50	702	33	22	66.6667
egarrison-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	95.5379	95.4068	95.6693	67.9563	727	35	729	33	24	72.7273
egarrison-hhga	INDEL	D1_5	map_l100_m1_e0	*	98.0764	97.9437	98.2094	82.9273	1810	38	1810	33	12	36.3636
egarrison-hhga	INDEL	D1_5	map_l100_m2_e0	*	98.1438	98.0157	98.2723	83.6389	1877	38	1877	33	12	36.3636
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	81.7466	69.7674	98.6920	34.2284	2460	1066	2490	33	24	72.7273
ckim-isaac	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	96.7448	94.4798	99.1212	50.4094	3714	217	3722	33	3	9.0909
ckim-isaac	SNP	ti	map_l125_m1_e0	het	78.2097	64.3326	99.7200	73.5328	11751	6515	11751	33	3	9.0909
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	76.2347	73.3333	79.3750	87.3317	121	44	127	33	10	30.3030
ckim-isaac	SNP	tv	map_l100_m2_e0	het	79.2946	65.8300	99.6834	69.5147	10386	5391	10389	33	8	24.2424
ckim-vqsr	INDEL	*	map_l150_m0_e0	*	95.5110	97.2763	93.8086	94.9219	500	14	500	33	2	6.0606
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.8165	94.2782	99.4953	23.7106	6492	394	6505	33	33	100.0000
ckim-vqsr	INDEL	D1_5	map_l125_m1_e0	het	95.7449	96.0055	95.4856	91.8049	697	29	698	33	3	9.0909
ckim-vqsr	INDEL	D1_5	map_l125_m2_e0	het	95.6835	95.6806	95.6863	92.2445	731	33	732	33	3	9.0909
ckim-vqsr	INDEL	D1_5	map_l125_m2_e1	het	95.6493	95.5844	95.7143	92.3154	736	34	737	33	3	9.0909
ckim-vqsr	INDEL	D6_15	HG002compoundhet	hetalt	96.9271	94.4179	99.5733	24.1268	7696	455	7700	33	33	100.0000
gduggal-snapvard	INDEL	I1_5	HG002compoundhet	homalt	81.6095	75.9878	88.1295	56.7652	250	79	245	33	30	90.9091
gduggal-snapvard	SNP	ti	func_cds	het	99.3512	99.0945	99.6092	31.0131	8427	77	8411	33	13	39.3939
gduggal-snapvard	SNP	ti	segdup	homalt	98.6062	97.6815	99.5484	88.2591	7331	174	7275	33	32	96.9697
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	59.3672	76.6667	48.4375	84.0000	46	14	31	33	11	33.3333
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	53.0409	42.6966	70.0000	56.1753	76	102	77	33	31	93.9394
ghariani-varprowl	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	het	72.3404	78.1609	67.3267	99.9209	68	19	68	33	18	54.5455
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.1579	99.2021	97.1354	67.6223	1119	9	1119	33	3	9.0909
gduggal-snapfb	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	62.6263	88.5714	48.4375	94.7840	31	4	31	33	6	18.1818
gduggal-snapplat	INDEL	*	map_l250_m1_e0	het	74.0557	68.4211	80.7018	98.2243	130	60	138	33	5	15.1515
gduggal-snapplat	INDEL	D1_5	map_siren	homalt	88.9159	82.0205	97.0771	85.2746	958	210	1096	33	7	21.2121
gduggal-snapplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	16.2560	11.4094	28.2609	78.7037	17	132	13	33	0	0.0000
gduggal-snapplat	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	92.2399	86.3055	99.0506	51.0836	3441	546	3443	33	14	42.4242
gduggal-snapvard	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	97.4077	95.0956	99.8350	48.2245	10742	554	19971	33	33	100.0000
gduggal-snapvard	INDEL	*	tech_badpromoters	*	57.9096	53.9474	62.5000	60.5381	41	35	55	33	24	72.7273
gduggal-snapvard	INDEL	*	tech_badpromoters	het	61.5513	69.2308	55.4054	61.8557	27	12	41	33	24	72.7273
gduggal-snapvard	INDEL	C1_5	lowcmp_SimpleRepeat_diTR_51to200	*	0.0000	0.0000	2.9412	89.6657	0	0	1	33	2	6.0606
gduggal-snapvard	INDEL	C1_5	map_l150_m0_e0	*	0.0000	0.0000	25.0000	96.2425	0	0	11	33	3	9.0909
gduggal-snapvard	INDEL	C1_5	map_l150_m0_e0	het	0.0000	0.0000	15.3846	96.1576	0	0	6	33	3	9.0909
ckim-dragen	INDEL	D1_5	HG002complexvar	homalt	99.7544	99.8207	99.6881	60.4958	10579	19	10549	33	30	90.9091
ckim-dragen	INDEL	I1_5	map_l100_m1_e0	*	97.1890	96.8633	97.5169	84.0762	1297	42	1296	33	8	24.2424
ckim-dragen	INDEL	I1_5	map_l100_m2_e0	*	97.2488	96.9298	97.5700	85.3664	1326	42	1325	33	8	24.2424
ckim-dragen	INDEL	I1_5	map_l100_m2_e1	*	97.3023	96.9892	97.6173	85.4425	1353	42	1352	33	8	24.2424
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.8012	99.6785	90.3790	71.4642	310	1	310	33	33	100.0000
ckim-dragen	SNP	*	HG002compoundhet	het	99.7322	99.6967	99.7677	46.4046	14135	43	14173	33	8	24.2424
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.3107	99.0992	99.5231	80.1218	6821	62	6887	33	15	45.4545
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.7675	99.8416	99.6935	39.2563	10715	17	10732	33	4	12.1212
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	88.6698	84.9899	92.6829	52.2246	419	74	418	33	30	90.9091
ciseli-custom	INDEL	D16_PLUS	map_siren	*	56.9106	48.9510	67.9612	87.2050	70	73	70	33	21	63.6364
ciseli-custom	INDEL	I1_5	map_l250_m1_e0	het	53.5433	56.6667	50.7463	97.1158	34	26	34	33	26	78.7879
ciseli-custom	INDEL	I1_5	map_l250_m2_e0	het	54.4118	56.0606	52.8571	97.3242	37	29	37	33	26	78.7879
ciseli-custom	INDEL	I1_5	map_l250_m2_e1	het	54.4118	56.0606	52.8571	97.3987	37	29	37	33	26	78.7879
ciseli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	49.1803	50.8475	47.6190	48.7805	30	29	30	33	26	78.7879
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2353	99.2360	97.2546	73.3953	1169	9	1169	33	33	100.0000

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