PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17001-17050 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | * | 60.4431 | 58.7629 | 62.2222 | 95.9441 | 57 | 40 | 56 | 34 | 24 | 70.5882 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | het | 71.2121 | 92.1569 | 58.0247 | 95.0670 | 47 | 4 | 47 | 34 | 24 | 70.5882 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m0_e0 | het | 79.3681 | 85.0000 | 74.4361 | 85.1064 | 51 | 9 | 99 | 34 | 20 | 58.8235 | |
| gduggal-snapvard | INDEL | I16_PLUS | * | homalt | 1.5180 | 0.7687 | 60.0000 | 43.7086 | 12 | 1549 | 51 | 34 | 22 | 64.7059 | |
| gduggal-snapvard | SNP | ti | func_cds | * | 99.4321 | 99.1151 | 99.7511 | 27.3375 | 13665 | 122 | 13628 | 34 | 14 | 41.1765 | |
| gduggal-snapvard | SNP | tv | func_cds | het | 98.7765 | 98.8333 | 98.7199 | 41.1608 | 2626 | 31 | 2622 | 34 | 9 | 26.4706 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m0_e0 | * | 82.1918 | 77.4194 | 87.5912 | 95.2848 | 240 | 70 | 240 | 34 | 1 | 2.9412 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 24.7191 | 18.0328 | 39.2857 | 73.0769 | 22 | 100 | 22 | 34 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 36.7887 | 26.4368 | 60.4651 | 99.9570 | 23 | 64 | 52 | 34 | 23 | 67.6471 | |
| gduggal-snapplat | INDEL | * | map_l250_m1_e0 | * | 76.0632 | 67.8689 | 86.5079 | 98.0285 | 207 | 98 | 218 | 34 | 5 | 14.7059 | |
| ghariani-varprowl | SNP | ti | map_l100_m1_e0 | homalt | 99.4271 | 99.0479 | 99.8092 | 60.5686 | 17789 | 171 | 17789 | 34 | 26 | 76.4706 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9212 | 95.2542 | 98.6476 | 65.8841 | 2529 | 126 | 2480 | 34 | 24 | 70.5882 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.1193 | 99.8906 | 96.4097 | 74.9802 | 913 | 1 | 913 | 34 | 3 | 8.8235 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 80.2831 | 67.3994 | 99.2563 | 60.8562 | 4538 | 2195 | 4538 | 34 | 12 | 35.2941 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e0 | * | 96.4133 | 95.3125 | 97.5398 | 89.5080 | 1342 | 66 | 1348 | 34 | 8 | 23.5294 | |
| gduggal-bwafb | INDEL | * | segdup | * | 97.4038 | 96.1659 | 98.6739 | 94.2256 | 2458 | 98 | 2530 | 34 | 21 | 61.7647 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 33.3333 | 95.6485 | 0 | 0 | 17 | 34 | 4 | 11.7647 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 32.0000 | 94.1995 | 0 | 0 | 16 | 34 | 4 | 11.7647 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 30.6122 | 94.1106 | 0 | 0 | 15 | 34 | 4 | 11.7647 | |
| gduggal-bwavard | INDEL | D1_5 | HG002complexvar | homalt | 96.6460 | 93.8290 | 99.6373 | 42.9597 | 9944 | 654 | 9340 | 34 | 22 | 64.7059 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.7068 | 91.9529 | 99.7804 | 63.8066 | 15609 | 1366 | 15447 | 34 | 16 | 47.0588 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.7068 | 91.9529 | 99.7804 | 63.8066 | 15609 | 1366 | 15447 | 34 | 16 | 47.0588 | |
| gduggal-snapfb | INDEL | * | map_l150_m0_e0 | * | 91.9264 | 90.6615 | 93.2271 | 91.6942 | 466 | 48 | 468 | 34 | 11 | 32.3529 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 87.3886 | 77.9606 | 99.4105 | 51.5253 | 5734 | 1621 | 5734 | 34 | 6 | 17.6471 | |
| gduggal-bwaplat | SNP | * | map_l150_m0_e0 | het | 60.8863 | 43.9547 | 99.0352 | 95.3638 | 3490 | 4450 | 3490 | 34 | 14 | 41.1765 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 88.3734 | 80.4048 | 98.0952 | 76.9380 | 1748 | 426 | 1751 | 34 | 4 | 11.7647 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 87.7124 | 80.0288 | 97.0280 | 79.4096 | 1110 | 277 | 1110 | 34 | 4 | 11.7647 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.3524 | 95.1444 | 95.5614 | 69.5669 | 725 | 37 | 732 | 34 | 14 | 41.1765 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.1767 | 75.0649 | 93.2540 | 64.2807 | 289 | 96 | 470 | 34 | 7 | 20.5882 | |
| gduggal-bwafb | INDEL | I1_5 | map_siren | * | 97.6773 | 96.5391 | 98.8428 | 79.9276 | 2901 | 104 | 2904 | 34 | 18 | 52.9412 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.2945 | 99.0956 | 99.4942 | 40.3814 | 6684 | 61 | 6688 | 34 | 20 | 58.8235 | |
| gduggal-bwafb | SNP | * | map_l100_m2_e0 | homalt | 99.5956 | 99.3169 | 99.8758 | 64.6135 | 27335 | 188 | 27335 | 34 | 20 | 58.8235 | |
| gduggal-bwafb | SNP | * | map_l100_m2_e1 | homalt | 99.5977 | 99.3200 | 99.8770 | 64.6290 | 27607 | 189 | 27607 | 34 | 20 | 58.8235 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 68.9127 | 81.8182 | 59.5238 | 95.2246 | 54 | 12 | 50 | 34 | 3 | 8.8235 | |
| eyeh-varpipe | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 2.8571 | 84.2342 | 0 | 0 | 1 | 34 | 30 | 88.2353 | |
| eyeh-varpipe | INDEL | D16_PLUS | * | hetalt | 28.3581 | 16.7098 | 93.6210 | 67.5396 | 323 | 1610 | 499 | 34 | 33 | 97.0588 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 28.2195 | 16.6235 | 93.3071 | 68.0905 | 321 | 1610 | 474 | 34 | 33 | 97.0588 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 28.2195 | 16.6235 | 93.3071 | 68.0905 | 321 | 1610 | 474 | 34 | 33 | 97.0588 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.1912 | 90.6623 | 98.0059 | 66.8030 | 1670 | 172 | 1671 | 34 | 28 | 82.3529 | |
| ckim-isaac | INDEL | * | map_l100_m1_e0 | het | 83.9386 | 73.4228 | 97.9701 | 85.4069 | 1641 | 594 | 1641 | 34 | 14 | 41.1765 | |
| ckim-dragen | INDEL | D16_PLUS | HG002compoundhet | het | 93.6315 | 98.5185 | 89.2063 | 59.4595 | 399 | 6 | 281 | 34 | 31 | 91.1765 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e0 | * | 54.0881 | 52.4390 | 55.8442 | 94.0769 | 43 | 39 | 43 | 34 | 16 | 47.0588 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.1384 | 90.5537 | 98.0186 | 60.1764 | 1668 | 174 | 1682 | 34 | 29 | 85.2941 | |
| cchapple-custom | SNP | ti | map_l250_m0_e0 | het | 95.0637 | 93.8972 | 96.2596 | 94.5783 | 877 | 57 | 875 | 34 | 12 | 35.2941 | |
| ciseli-custom | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 22.7273 | 96.3272 | 0 | 0 | 10 | 34 | 15 | 44.1176 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.4003 | 99.3113 | 99.4894 | 56.4059 | 6633 | 46 | 6625 | 34 | 32 | 94.1176 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m1_e0 | het | 96.3840 | 97.3829 | 95.4054 | 88.2297 | 707 | 19 | 706 | 34 | 3 | 8.8235 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.3094 | 99.6937 | 95.0365 | 73.7548 | 651 | 2 | 651 | 34 | 34 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.0881 | 92.2652 | 86.1224 | 81.9720 | 334 | 28 | 211 | 34 | 34 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.9828 | 98.1401 | 97.8261 | 72.8896 | 1583 | 30 | 1530 | 34 | 24 | 70.5882 | |