PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16301-16350 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | tv | tech_badpromoters | * | 78.6517 | 100.0000 | 64.8148 | 71.8750 | 72 | 0 | 70 | 38 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | tech_badpromoters | het | 63.4615 | 100.0000 | 46.4789 | 76.6447 | 33 | 0 | 33 | 38 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.0294 | 99.2360 | 96.8517 | 72.5744 | 1169 | 9 | 1169 | 38 | 38 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6271 | 99.4292 | 99.8258 | 72.6049 | 21774 | 125 | 21771 | 38 | 37 | 97.3684 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.3240 | 95.7792 | 96.8750 | 60.5835 | 1180 | 52 | 1178 | 38 | 26 | 68.4211 | |
| rpoplin-dv42 | SNP | * | map_l125_m1_e0 | homalt | 99.4988 | 99.2251 | 99.7740 | 66.6415 | 16774 | 131 | 16774 | 38 | 37 | 97.3684 | |
| rpoplin-dv42 | SNP | * | map_l250_m0_e0 | het | 97.3404 | 97.2112 | 97.4700 | 92.1200 | 1464 | 42 | 1464 | 38 | 23 | 60.5263 | |
| rpoplin-dv42 | SNP | ti | map_l100_m2_e0 | homalt | 99.6664 | 99.5412 | 99.7919 | 62.9736 | 18225 | 84 | 18226 | 38 | 36 | 94.7368 | |
| rpoplin-dv42 | SNP | ti | map_l100_m2_e1 | homalt | 99.6670 | 99.5404 | 99.7940 | 62.9692 | 18409 | 85 | 18410 | 38 | 36 | 94.7368 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e1 | het | 97.4661 | 96.8957 | 98.0433 | 89.2902 | 1904 | 61 | 1904 | 38 | 1 | 2.6316 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.0139 | 98.4069 | 99.6285 | 44.6543 | 10192 | 165 | 10191 | 38 | 37 | 97.3684 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m0_e0 | * | 95.9835 | 98.7109 | 93.4028 | 88.9103 | 536 | 7 | 538 | 38 | 3 | 7.8947 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5103 | 99.5446 | 99.4760 | 35.3827 | 7214 | 33 | 7214 | 38 | 38 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.7125 | 97.6953 | 99.7510 | 72.1894 | 15218 | 359 | 15225 | 38 | 29 | 76.3158 | |
| hfeng-pmm2 | INDEL | I6_15 | HG002complexvar | * | 98.1553 | 97.1411 | 99.1910 | 57.4123 | 4655 | 137 | 4659 | 38 | 37 | 97.3684 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2477 | 99.2381 | 99.2572 | 75.1119 | 5080 | 39 | 5078 | 38 | 20 | 52.6316 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.0781 | 96.4876 | 95.6720 | 82.3695 | 934 | 34 | 840 | 38 | 30 | 78.9474 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.1113 | 93.6897 | 96.5766 | 79.4254 | 1069 | 72 | 1072 | 38 | 21 | 55.2632 | |
| hfeng-pmm2 | SNP | * | map_l100_m1_e0 | homalt | 99.8648 | 99.8704 | 99.8593 | 60.9853 | 26968 | 35 | 26968 | 38 | 19 | 50.0000 | |
| hfeng-pmm2 | SNP | * | map_l100_m2_e0 | homalt | 99.8674 | 99.8728 | 99.8619 | 63.3992 | 27488 | 35 | 27488 | 38 | 19 | 50.0000 | |
| hfeng-pmm2 | SNP | * | map_l100_m2_e1 | homalt | 99.8687 | 99.8741 | 99.8633 | 63.3911 | 27761 | 35 | 27761 | 38 | 19 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | map_siren | het | 98.9897 | 98.8243 | 99.1556 | 80.3605 | 4455 | 53 | 4462 | 38 | 4 | 10.5263 | |
| hfeng-pmm3 | SNP | * | map_l250_m0_e0 | * | 98.2916 | 98.3607 | 98.2226 | 92.8676 | 2100 | 35 | 2100 | 38 | 6 | 15.7895 | |
| hfeng-pmm3 | SNP | ti | * | homalt | 99.9929 | 99.9905 | 99.9953 | 16.6242 | 802962 | 76 | 802953 | 38 | 27 | 71.0526 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5901 | 97.6240 | 99.5756 | 74.7725 | 8916 | 217 | 8916 | 38 | 5 | 13.1579 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5901 | 97.6240 | 99.5756 | 74.7725 | 8916 | 217 | 8916 | 38 | 5 | 13.1579 | |
| hfeng-pmm2 | INDEL | * | map_l125_m1_e0 | het | 97.7323 | 98.2772 | 97.1935 | 88.0494 | 1312 | 23 | 1316 | 38 | 3 | 7.8947 | |
| hfeng-pmm2 | INDEL | * | map_l125_m2_e0 | het | 97.7864 | 98.2746 | 97.3031 | 88.7801 | 1367 | 24 | 1371 | 38 | 3 | 7.8947 | |
| hfeng-pmm2 | INDEL | * | map_l125_m2_e1 | het | 97.8130 | 98.2955 | 97.3352 | 88.8707 | 1384 | 24 | 1388 | 38 | 3 | 7.8947 | |
| hfeng-pmm2 | INDEL | * | map_l150_m2_e0 | * | 97.9932 | 98.6506 | 97.3445 | 90.3934 | 1389 | 19 | 1393 | 38 | 6 | 15.7895 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.5381 | 97.5357 | 97.5405 | 74.8248 | 1504 | 38 | 1507 | 38 | 24 | 63.1579 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 83.1419 | 76.6600 | 90.8213 | 72.4184 | 381 | 116 | 376 | 38 | 25 | 65.7895 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.3978 | 94.1426 | 96.6870 | 72.1399 | 1109 | 69 | 1109 | 38 | 29 | 76.3158 | |
| egarrison-hhga | SNP | ti | HG002compoundhet | het | 98.7211 | 97.8643 | 99.5931 | 37.6968 | 9302 | 203 | 9300 | 38 | 21 | 55.2632 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.0078 | 97.9824 | 98.0331 | 65.1766 | 1894 | 39 | 1894 | 38 | 36 | 94.7368 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 79.1209 | 100.0000 | 65.4545 | 84.4193 | 169 | 0 | 72 | 38 | 37 | 97.3684 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.1068 | 94.7612 | 99.5714 | 64.0076 | 8809 | 487 | 8828 | 38 | 38 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.8550 | 94.3417 | 99.5058 | 29.2966 | 7603 | 456 | 7651 | 38 | 38 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.8550 | 94.3417 | 99.5058 | 29.2966 | 7603 | 456 | 7651 | 38 | 38 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0199 | 98.6449 | 99.3978 | 76.9388 | 6333 | 87 | 6272 | 38 | 24 | 63.1579 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.0199 | 98.6449 | 99.3978 | 76.9388 | 6333 | 87 | 6272 | 38 | 24 | 63.1579 | |
| ckim-vqsr | INDEL | I6_15 | HG002complexvar | homalt | 98.4178 | 99.9176 | 96.9624 | 55.5753 | 1213 | 1 | 1213 | 38 | 38 | 100.0000 | |
| ckim-vqsr | SNP | tv | map_l150_m0_e0 | * | 60.1129 | 43.3637 | 97.9437 | 94.7907 | 1810 | 2364 | 1810 | 38 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | map_l150_m0_e0 | het | 70.7202 | 55.4344 | 97.6456 | 94.7782 | 1576 | 1267 | 1576 | 38 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.6358 | 95.7046 | 99.6464 | 30.5076 | 10628 | 477 | 10709 | 38 | 37 | 97.3684 | |
| dgrover-gatk | INDEL | D16_PLUS | HG002complexvar | * | 97.6446 | 97.6263 | 97.6630 | 66.8096 | 1604 | 39 | 1588 | 38 | 27 | 71.0526 | |
| dgrover-gatk | INDEL | D6_15 | HG002complexvar | hetalt | 94.7256 | 93.1885 | 96.3143 | 48.2949 | 944 | 69 | 993 | 38 | 37 | 97.3684 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0909 | 98.7850 | 99.3987 | 76.0252 | 6342 | 78 | 6282 | 38 | 24 | 63.1579 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.0909 | 98.7850 | 99.3987 | 76.0252 | 6342 | 78 | 6282 | 38 | 24 | 63.1579 | |
| dgrover-gatk | SNP | * | HG002compoundhet | het | 99.7355 | 99.7390 | 99.7320 | 46.0622 | 14141 | 37 | 14139 | 38 | 24 | 63.1579 | |