PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16051-16100 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.1521 | 97.1677 | 99.1567 | 66.2396 | 4700 | 137 | 4703 | 40 | 25 | 62.5000 | |
| qzeng-custom | INDEL | * | HG002compoundhet | hetalt | 86.4434 | 76.5369 | 99.2955 | 48.8192 | 19272 | 5908 | 5638 | 40 | 29 | 72.5000 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9981 | 84.0955 | 99.1351 | 58.5016 | 12965 | 2452 | 4585 | 40 | 31 | 77.5000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 4.7619 | 50.0000 | 0 | 0 | 2 | 40 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l125_m1_e0 | het | 66.1838 | 50.9363 | 94.4598 | 80.5181 | 680 | 655 | 682 | 40 | 17 | 42.5000 | |
| mlin-fermikit | INDEL | I6_15 | * | hetalt | 71.1528 | 55.4789 | 99.1705 | 39.8078 | 4744 | 3807 | 4782 | 40 | 40 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 72.9167 | 73.4266 | 72.4138 | 93.7392 | 105 | 38 | 105 | 40 | 29 | 72.5000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.8525 | 95.1101 | 98.6600 | 66.4833 | 2937 | 151 | 2945 | 40 | 2 | 5.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.2925 | 97.1972 | 99.4127 | 32.2154 | 6693 | 193 | 6771 | 40 | 40 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002compoundhet | hetalt | 97.6303 | 95.8410 | 99.4878 | 26.1770 | 7812 | 339 | 7769 | 40 | 40 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e0 | het | 89.9373 | 83.9968 | 96.7820 | 89.9588 | 1055 | 201 | 1203 | 40 | 27 | 67.5000 | |
| ndellapenna-hhga | INDEL | * | segdup | het | 97.9748 | 98.6357 | 97.3226 | 94.1248 | 1446 | 20 | 1454 | 40 | 27 | 67.5000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_siren | * | 91.7468 | 91.3556 | 92.1415 | 83.5594 | 465 | 44 | 469 | 40 | 20 | 50.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 66.0697 | 66.0377 | 66.1017 | 87.0756 | 35 | 18 | 78 | 40 | 3 | 7.5000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 66.8790 | 66.0377 | 67.7419 | 87.6000 | 35 | 18 | 84 | 40 | 3 | 7.5000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.0167 | 99.6391 | 98.4019 | 66.3620 | 2485 | 9 | 2463 | 40 | 1 | 2.5000 | |
| qzeng-custom | SNP | tv | HG002compoundhet | homalt | 98.8473 | 99.1145 | 98.5816 | 49.2075 | 3358 | 30 | 2780 | 40 | 35 | 87.5000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m0_e0 | * | 95.2178 | 98.1855 | 92.4242 | 92.0494 | 487 | 9 | 488 | 40 | 3 | 7.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 97.7805 | 98.5063 | 97.0653 | 87.3586 | 1319 | 20 | 1323 | 40 | 5 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 97.8271 | 98.5380 | 97.1264 | 88.2650 | 1348 | 20 | 1352 | 40 | 5 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e1 | * | 97.8688 | 98.5663 | 97.1811 | 88.3046 | 1375 | 20 | 1379 | 40 | 5 | 12.5000 | |
| jmaeng-gatk | SNP | * | map_l250_m0_e0 | * | 63.1215 | 46.9789 | 96.1649 | 98.1269 | 1003 | 1132 | 1003 | 40 | 3 | 7.5000 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002compoundhet | hetalt | 96.2297 | 93.1910 | 99.4731 | 25.6779 | 7596 | 555 | 7552 | 40 | 40 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m1_e0 | * | 93.8289 | 93.3054 | 94.3583 | 88.8610 | 669 | 48 | 669 | 40 | 20 | 50.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 79.5890 | 75.9398 | 83.6066 | 81.9793 | 202 | 64 | 204 | 40 | 39 | 97.5000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 58.3890 | 51.6129 | 67.2131 | 82.5714 | 80 | 75 | 82 | 40 | 40 | 100.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.5485 | 98.6635 | 98.4338 | 60.5864 | 2510 | 34 | 2514 | 40 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.8472 | 76.6302 | 97.5845 | 55.5436 | 1610 | 491 | 1616 | 40 | 37 | 92.5000 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e0 | * | 98.9478 | 98.1084 | 99.8017 | 69.1640 | 20124 | 388 | 20128 | 40 | 16 | 40.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.4114 | 96.3910 | 96.4318 | 79.9786 | 1282 | 48 | 1081 | 40 | 36 | 90.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m1_e0 | het | 88.2318 | 85.4772 | 91.1700 | 92.4108 | 412 | 70 | 413 | 40 | 4 | 10.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 88.6513 | 85.7977 | 91.7012 | 92.6948 | 441 | 73 | 442 | 40 | 4 | 10.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e1 | het | 88.6104 | 85.6322 | 91.8033 | 92.7262 | 447 | 75 | 448 | 40 | 4 | 10.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0359 | 98.7072 | 99.3669 | 75.4765 | 6337 | 83 | 6278 | 40 | 26 | 65.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.0359 | 98.7072 | 99.3669 | 75.4765 | 6337 | 83 | 6278 | 40 | 26 | 65.0000 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.9539 | 97.6909 | 98.2183 | 50.5289 | 2200 | 52 | 2205 | 40 | 32 | 80.0000 | |
| astatham-gatk | SNP | ti | map_l125_m0_e0 | * | 92.8568 | 86.9378 | 99.6407 | 77.9287 | 11095 | 1667 | 11093 | 40 | 20 | 50.0000 | |
| astatham-gatk | SNP | tv | map_siren | het | 88.3820 | 79.2932 | 99.8239 | 66.9200 | 22685 | 5924 | 22680 | 40 | 11 | 27.5000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.5982 | 99.4083 | 63.6364 | 84.3528 | 168 | 1 | 70 | 40 | 39 | 97.5000 | |
| astatham-gatk | INDEL | D1_5 | HG002compoundhet | hetalt | 97.2654 | 95.0470 | 99.5898 | 58.5927 | 9710 | 506 | 9711 | 40 | 39 | 97.5000 | |
| astatham-gatk | INDEL | D6_15 | * | hetalt | 97.1014 | 94.8251 | 99.4898 | 33.5762 | 7751 | 423 | 7800 | 40 | 39 | 97.5000 | |
| astatham-gatk | INDEL | I6_15 | HG002complexvar | * | 98.5836 | 98.0175 | 99.1563 | 57.7225 | 4697 | 95 | 4701 | 40 | 39 | 97.5000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.9663 | 95.1890 | 98.8113 | 52.9502 | 3324 | 168 | 3325 | 40 | 33 | 82.5000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m1_e0 | het | 76.0494 | 78.5714 | 73.6842 | 85.5238 | 99 | 27 | 112 | 40 | 23 | 57.5000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | het | 75.7043 | 77.0992 | 74.3590 | 85.9586 | 101 | 30 | 116 | 40 | 23 | 57.5000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e1 | het | 75.1170 | 75.5556 | 74.6835 | 86.0301 | 102 | 33 | 118 | 40 | 23 | 57.5000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.1408 | 94.9941 | 99.3867 | 29.3238 | 6471 | 341 | 6482 | 40 | 39 | 97.5000 | |
| rpoplin-dv42 | INDEL | D1_5 | HG002compoundhet | homalt | 93.1153 | 98.9691 | 87.9154 | 78.3801 | 288 | 3 | 291 | 40 | 38 | 95.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m0_e0 | * | 97.4527 | 97.7372 | 97.1698 | 91.9458 | 1339 | 31 | 1339 | 39 | 1 | 2.5641 | |
| raldana-dualsentieon | SNP | tv | map_l250_m1_e0 | * | 98.0065 | 97.5066 | 98.5115 | 87.3534 | 2581 | 66 | 2581 | 39 | 3 | 7.6923 | |