PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15851-15900 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 21.1538 | 92.0368 | 0 | 0 | 11 | 41 | 22 | 53.6585 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 51.7990 | 43.9490 | 63.0631 | 54.1322 | 69 | 88 | 70 | 41 | 41 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | HG002complexvar | hetalt | 71.6240 | 56.8366 | 96.8118 | 75.7679 | 981 | 745 | 1245 | 41 | 39 | 95.1220 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 52.8467 | 36.1380 | 98.2938 | 38.9792 | 1456 | 2573 | 2362 | 41 | 37 | 90.2439 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m1_e0 | het | 97.0283 | 97.4260 | 96.6338 | 80.2465 | 757 | 20 | 1177 | 41 | 27 | 65.8537 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 37.1380 | 22.9618 | 97.0630 | 40.4691 | 583 | 1956 | 1355 | 41 | 41 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_siren | het | 87.4010 | 78.3274 | 98.8522 | 90.8215 | 3531 | 977 | 3531 | 41 | 15 | 36.5854 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 81.9324 | 70.9821 | 96.8774 | 72.2175 | 1272 | 520 | 1272 | 41 | 32 | 78.0488 | |
| gduggal-bwaplat | INDEL | D1_5 | HG002compoundhet | hetalt | 84.6945 | 73.7471 | 99.4587 | 70.0372 | 7534 | 2682 | 7533 | 41 | 39 | 95.1220 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e1 | * | 93.8347 | 95.2919 | 92.4214 | 91.6756 | 506 | 25 | 500 | 41 | 15 | 36.5854 | |
| gduggal-bwavard | INDEL | I6_15 | segdup | * | 68.6994 | 65.1429 | 72.6667 | 92.8605 | 114 | 61 | 109 | 41 | 40 | 97.5610 | |
| gduggal-bwavard | INDEL | I6_15 | segdup | het | 78.4212 | 97.5904 | 65.5462 | 93.4795 | 81 | 2 | 78 | 41 | 40 | 97.5610 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 72.7828 | 81.3725 | 65.8333 | 95.3952 | 83 | 19 | 79 | 41 | 9 | 21.9512 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 78.3058 | 87.0968 | 71.1268 | 92.7366 | 108 | 16 | 101 | 41 | 7 | 17.0732 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 52.7839 | 52.6946 | 52.8736 | 74.7093 | 88 | 79 | 46 | 41 | 18 | 43.9024 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 56.3830 | 94.8996 | 0 | 0 | 53 | 41 | 4 | 9.7561 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 46.7532 | 95.2615 | 0 | 0 | 36 | 41 | 4 | 9.7561 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 79.7506 | 68.0178 | 96.3749 | 45.6511 | 2601 | 1223 | 1090 | 41 | 40 | 97.5610 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.5570 | 99.4777 | 99.6364 | 55.6678 | 11237 | 59 | 11234 | 41 | 40 | 97.5610 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 74.7826 | 85.1485 | 66.6667 | 94.5791 | 86 | 15 | 82 | 41 | 9 | 21.9512 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1847 | 98.9875 | 99.3827 | 46.8597 | 6648 | 68 | 6601 | 41 | 10 | 24.3902 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8496 | 98.7433 | 98.9562 | 63.8705 | 3850 | 49 | 3887 | 41 | 14 | 34.1463 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m2_e0 | * | 99.0101 | 98.1724 | 99.8622 | 61.4718 | 29705 | 553 | 29707 | 41 | 10 | 24.3902 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m2_e1 | * | 99.0186 | 98.1877 | 99.8636 | 61.5506 | 30015 | 554 | 30018 | 41 | 10 | 24.3902 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e0 | het | 67.2880 | 52.1927 | 94.6684 | 82.7849 | 726 | 665 | 728 | 41 | 17 | 41.4634 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 66.6138 | 66.0377 | 67.2000 | 87.7089 | 35 | 18 | 84 | 41 | 3 | 7.3171 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.9647 | 99.8160 | 98.1279 | 69.9341 | 2170 | 4 | 2149 | 41 | 1 | 2.4390 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.3855 | 99.7116 | 97.0943 | 71.3328 | 1383 | 4 | 1370 | 41 | 1 | 2.4390 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 95.2623 | 98.5801 | 92.1606 | 58.7214 | 486 | 7 | 482 | 41 | 1 | 2.4390 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 52.3636 | 90.0000 | 36.9231 | 94.2376 | 18 | 2 | 24 | 41 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e1 | het | 89.9622 | 84.0694 | 96.7434 | 89.9976 | 1066 | 202 | 1218 | 41 | 27 | 65.8537 | |
| qzeng-custom | INDEL | I16_PLUS | map_siren | * | 65.7764 | 70.9302 | 61.3208 | 81.7556 | 61 | 25 | 65 | 41 | 5 | 12.1951 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.6086 | 92.9919 | 94.2335 | 70.5102 | 690 | 52 | 670 | 41 | 20 | 48.7805 | |
| ndellapenna-hhga | SNP | ti | map_l150_m1_e0 | * | 99.0365 | 98.2955 | 99.7888 | 72.3511 | 19376 | 336 | 19376 | 41 | 23 | 56.0976 | |
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5343 | 99.4751 | 99.5935 | 60.5291 | 10044 | 53 | 10045 | 41 | 39 | 95.1220 | |
| ghariani-varprowl | INDEL | * | func_cds | * | 91.6388 | 92.3596 | 90.9292 | 61.0680 | 411 | 34 | 411 | 41 | 30 | 73.1707 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m1_e0 | * | 86.3271 | 94.1520 | 79.7030 | 96.1626 | 161 | 10 | 161 | 41 | 4 | 9.7561 | |
| gduggal-snapplat | INDEL | * | map_l100_m1_e0 | homalt | 84.8014 | 75.8761 | 96.1064 | 87.1554 | 931 | 296 | 1012 | 41 | 2 | 4.8781 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | homalt | 84.9002 | 75.9715 | 96.2072 | 87.8170 | 958 | 303 | 1040 | 41 | 2 | 4.8781 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e1 | homalt | 84.9123 | 75.9563 | 96.2625 | 87.8918 | 973 | 308 | 1056 | 41 | 2 | 4.8781 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e1 | * | 95.4657 | 96.1440 | 94.7970 | 88.9775 | 748 | 30 | 747 | 41 | 8 | 19.5122 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 85.9762 | 77.6671 | 96.2761 | 24.1736 | 546 | 157 | 1060 | 41 | 41 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m0_e0 | * | 94.1894 | 95.7643 | 92.6655 | 86.2889 | 520 | 23 | 518 | 41 | 8 | 19.5122 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 41.1854 | 27.9851 | 77.9570 | 49.7297 | 150 | 386 | 145 | 41 | 41 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 69.4882 | 58.7467 | 85.0365 | 91.8258 | 225 | 158 | 233 | 41 | 17 | 41.4634 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 71.3745 | 60.3412 | 87.3457 | 93.7848 | 283 | 186 | 283 | 41 | 21 | 51.2195 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 29.7662 | 18.0480 | 84.8708 | 63.2791 | 233 | 1058 | 230 | 41 | 31 | 75.6098 | |
| gduggal-snapplat | INDEL | I1_5 | func_cds | * | 72.3894 | 69.4444 | 75.5952 | 55.4377 | 125 | 55 | 127 | 41 | 1 | 2.4390 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 55.2595 | 38.9041 | 95.3409 | 37.9408 | 852 | 1338 | 839 | 41 | 31 | 75.6098 | |
| ghariani-varprowl | SNP | * | map_l150_m1_e0 | homalt | 98.8738 | 98.1283 | 99.6307 | 72.3027 | 11062 | 211 | 11062 | 41 | 25 | 60.9756 | |