PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15451-15500 / 86044 show all | |||||||||||||||
| ckim-isaac | SNP | ti | * | homalt | 98.4855 | 97.0214 | 99.9944 | 13.4256 | 779120 | 23919 | 779153 | 44 | 32 | 72.7273 | |
| ckim-vqsr | INDEL | * | map_l150_m1_e0 | het | 94.8598 | 94.8538 | 94.8658 | 94.1088 | 811 | 44 | 813 | 44 | 4 | 9.0909 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.6703 | 94.6112 | 98.8210 | 55.5926 | 3687 | 210 | 3688 | 44 | 37 | 84.0909 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 76.5171 | 62.3875 | 98.9208 | 32.6004 | 4296 | 2590 | 4033 | 44 | 40 | 90.9091 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 93.5628 | 88.9960 | 98.6237 | 42.7471 | 3138 | 388 | 3153 | 44 | 40 | 90.9091 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 93.5628 | 88.9960 | 98.6237 | 42.7471 | 3138 | 388 | 3153 | 44 | 40 | 90.9091 | |
| egarrison-hhga | SNP | ti | map_l125_m2_e1 | het | 99.2602 | 98.7583 | 99.7671 | 71.8965 | 18850 | 237 | 18850 | 44 | 16 | 36.3636 | |
| dgrover-gatk | INDEL | D1_5 | HG002complexvar | hetalt | 95.3242 | 93.9349 | 96.7552 | 73.1272 | 1270 | 82 | 1312 | 44 | 43 | 97.7273 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 85.6169 | 76.2817 | 97.5556 | 48.0669 | 1473 | 458 | 1756 | 44 | 37 | 84.0909 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 85.6169 | 76.2817 | 97.5556 | 48.0669 | 1473 | 458 | 1756 | 44 | 37 | 84.0909 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 93.4806 | 90.2724 | 96.9252 | 69.0862 | 1392 | 150 | 1387 | 44 | 22 | 50.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 91.1743 | 84.7584 | 98.6411 | 42.0544 | 3192 | 574 | 3194 | 44 | 30 | 68.1818 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 91.1743 | 84.7584 | 98.6411 | 42.0544 | 3192 | 574 | 3194 | 44 | 30 | 68.1818 | |
| ckim-isaac | INDEL | I6_15 | HG002complexvar | hetalt | 70.4127 | 56.1733 | 94.3226 | 46.2179 | 687 | 536 | 731 | 44 | 30 | 68.1818 | |
| dgrover-gatk | SNP | * | map_l250_m0_e0 | het | 97.2149 | 97.3440 | 97.0861 | 94.4551 | 1466 | 40 | 1466 | 44 | 7 | 15.9091 | |
| dgrover-gatk | SNP | tv | map_l250_m1_e0 | het | 97.6809 | 97.8176 | 97.5446 | 90.8347 | 1748 | 39 | 1748 | 44 | 8 | 18.1818 | |
| dgrover-gatk | SNP | tv | segdup | * | 99.6606 | 99.8359 | 99.4859 | 91.6354 | 8518 | 14 | 8514 | 44 | 6 | 13.6364 | |
| qzeng-custom | SNP | ti | segdup | homalt | 99.3042 | 99.2005 | 99.4081 | 87.0359 | 7445 | 60 | 7390 | 44 | 39 | 88.6364 | |
| qzeng-custom | SNP | tv | map_l125_m2_e0 | homalt | 84.1423 | 73.1594 | 99.0054 | 69.1320 | 4402 | 1615 | 4380 | 44 | 44 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.8703 | 98.0010 | 99.7551 | 37.4155 | 17894 | 365 | 17924 | 44 | 41 | 93.1818 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.0229 | 97.8447 | 98.2019 | 70.5216 | 2406 | 53 | 2403 | 44 | 6 | 13.6364 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e0 | * | 98.7380 | 97.6422 | 99.8587 | 65.4099 | 31101 | 751 | 31104 | 44 | 9 | 20.4545 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e1 | * | 98.7491 | 97.6622 | 99.8603 | 65.5073 | 31457 | 753 | 31463 | 44 | 9 | 20.4545 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.2193 | 94.2819 | 94.1567 | 58.3748 | 709 | 43 | 709 | 44 | 28 | 63.6364 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 74.1810 | 59.3050 | 99.0185 | 33.0396 | 4847 | 3326 | 4439 | 44 | 37 | 84.0909 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.1729 | 95.2004 | 99.2289 | 61.5550 | 5653 | 285 | 5662 | 44 | 38 | 86.3636 | |
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | * | 99.1238 | 98.5327 | 99.7220 | 67.2834 | 15781 | 235 | 15781 | 44 | 22 | 50.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 49.0231 | 85.7143 | 34.3284 | 99.8804 | 18 | 3 | 23 | 44 | 2 | 4.5455 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 80.9710 | 68.2936 | 99.4281 | 31.4166 | 7584 | 3521 | 7649 | 44 | 44 | 100.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 78.9414 | 87.4016 | 71.9745 | 49.1909 | 111 | 16 | 113 | 44 | 39 | 88.6364 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 27.5766 | 73.3333 | 16.9811 | 93.8799 | 11 | 4 | 9 | 44 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 27.6923 | 75.0000 | 16.9811 | 94.1436 | 12 | 4 | 9 | 44 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 27.6923 | 75.0000 | 16.9811 | 94.1950 | 12 | 4 | 9 | 44 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_siren | homalt | 49.9283 | 85.2941 | 35.2941 | 93.4678 | 29 | 5 | 24 | 44 | 1 | 2.2727 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 63.9167 | 73.6842 | 56.4356 | 98.6567 | 42 | 15 | 57 | 44 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m1_e0 | homalt | 70.2797 | 61.4679 | 82.0408 | 75.7185 | 201 | 126 | 201 | 44 | 42 | 95.4545 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e0 | homalt | 71.0218 | 62.1701 | 82.8125 | 78.5774 | 212 | 129 | 212 | 44 | 42 | 95.4545 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e1 | homalt | 71.2146 | 62.3907 | 82.9457 | 78.9731 | 214 | 129 | 214 | 44 | 42 | 95.4545 | |
| mlin-fermikit | SNP | tv | HG002compoundhet | het | 90.8488 | 84.0146 | 98.8934 | 54.3251 | 3926 | 747 | 3932 | 44 | 8 | 18.1818 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 89.8936 | 85.5422 | 94.7115 | 86.1932 | 781 | 132 | 788 | 44 | 4 | 9.0909 | |
| cchapple-custom | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 91.5709 | 83.0574 | 0 | 0 | 478 | 44 | 6 | 13.6364 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2667 | 99.3211 | 99.2123 | 71.8135 | 5559 | 38 | 5542 | 44 | 35 | 79.5455 | |
| ckim-dragen | INDEL | I1_5 | HG002complexvar | homalt | 99.7432 | 99.8141 | 99.6725 | 52.7072 | 13423 | 25 | 13390 | 44 | 44 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 96.2575 | 99.0755 | 93.5953 | 68.1797 | 643 | 6 | 643 | 44 | 44 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.9137 | 96.7068 | 99.1511 | 64.1489 | 5139 | 175 | 5139 | 44 | 40 | 90.9091 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0984 | 99.3619 | 98.8363 | 71.4448 | 3737 | 24 | 3737 | 44 | 44 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0984 | 99.3619 | 98.8363 | 71.4448 | 3737 | 24 | 3737 | 44 | 44 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | HG002complexvar | * | 98.1470 | 97.2454 | 99.0654 | 57.0085 | 4660 | 132 | 4664 | 44 | 43 | 97.7273 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.6974 | 94.6626 | 98.8216 | 55.5793 | 3689 | 208 | 3690 | 44 | 37 | 84.0909 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 89.1293 | 81.6555 | 98.1092 | 39.4326 | 2190 | 492 | 2283 | 44 | 37 | 84.0909 | |