PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14801-14850 / 86044 show all | |||||||||||||||
| astatham-gatk | SNP | ti | map_l100_m2_e1 | het | 87.0268 | 77.1576 | 99.7911 | 74.6941 | 23888 | 7072 | 23881 | 50 | 23 | 46.0000 | |
| asubramanian-gatk | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 79.3388 | 0 | 0 | 0 | 50 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 79.3388 | 0 | 0 | 0 | 50 | 0 | 0.0000 | ||
| astatham-gatk | SNP | * | segdup | * | 99.1969 | 98.5784 | 99.8232 | 90.3648 | 27668 | 399 | 27662 | 49 | 12 | 24.4898 | |
| astatham-gatk | SNP | ti | map_l100_m1_e0 | het | 86.8541 | 76.8887 | 99.7875 | 73.5726 | 23022 | 6920 | 23015 | 49 | 23 | 46.9388 | |
| astatham-gatk | SNP | ti | map_l100_m2_e0 | het | 86.9897 | 77.0982 | 99.7928 | 74.7072 | 23609 | 7013 | 23602 | 49 | 23 | 46.9388 | |
| asubramanian-gatk | INDEL | * | map_l125_m0_e0 | * | 91.5650 | 89.1156 | 94.1527 | 97.5656 | 786 | 96 | 789 | 49 | 3 | 6.1225 | |
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 80.5556 | 0 | 0 | 0 | 49 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 83.9869 | 0 | 0 | 0 | 49 | 0 | 0.0000 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 36.7207 | 26.5537 | 59.5041 | 62.8834 | 47 | 130 | 72 | 49 | 25 | 51.0204 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.6118 | 90.0651 | 97.4492 | 65.8974 | 1659 | 183 | 1872 | 49 | 41 | 83.6735 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.1816 | 92.7536 | 84.0391 | 90.9546 | 256 | 20 | 258 | 49 | 3 | 6.1225 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.1489 | 92.9019 | 99.6311 | 33.4986 | 13036 | 996 | 13232 | 49 | 48 | 97.9592 | |
| bgallagher-sentieon | INDEL | * | map_l100_m0_e0 | * | 97.7511 | 98.5925 | 96.9240 | 87.0372 | 1541 | 22 | 1544 | 49 | 9 | 18.3673 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.7313 | 99.3358 | 96.1778 | 82.5839 | 1346 | 9 | 1233 | 49 | 32 | 65.3061 | |
| astatham-gatk | INDEL | I1_5 | HG002complexvar | * | 99.6397 | 99.4275 | 99.8527 | 57.1222 | 33172 | 191 | 33219 | 49 | 39 | 79.5918 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.4850 | 94.3803 | 98.6856 | 56.4231 | 3678 | 219 | 3679 | 49 | 42 | 85.7143 | |
| bgallagher-sentieon | SNP | * | HG002compoundhet | * | 99.8063 | 99.8025 | 99.8102 | 41.0420 | 25771 | 51 | 25764 | 49 | 25 | 51.0204 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.1774 | 93.6073 | 92.7515 | 79.6508 | 820 | 56 | 627 | 49 | 48 | 97.9592 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1424 | 95.1756 | 99.1922 | 62.0377 | 6017 | 305 | 6017 | 49 | 41 | 83.6735 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1424 | 95.1756 | 99.1922 | 62.0377 | 6017 | 305 | 6017 | 49 | 41 | 83.6735 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.8143 | 97.9008 | 99.7450 | 65.3085 | 19168 | 411 | 19168 | 49 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.8143 | 97.9008 | 99.7450 | 65.3085 | 19168 | 411 | 19168 | 49 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | map_l100_m0_e0 | * | 99.3900 | 99.2241 | 99.5564 | 68.9143 | 10998 | 86 | 10997 | 49 | 15 | 30.6122 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.1750 | 93.3148 | 87.2396 | 48.1081 | 335 | 24 | 335 | 49 | 47 | 95.9184 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.7838 | 96.2244 | 99.3945 | 58.5102 | 8079 | 317 | 8044 | 49 | 40 | 81.6327 | |
| hfeng-pmm3 | INDEL | D6_15 | * | homalt | 99.3845 | 99.5416 | 99.2279 | 50.7795 | 6297 | 29 | 6297 | 49 | 45 | 91.8367 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0206 | 99.3362 | 98.7071 | 54.3318 | 3741 | 25 | 3741 | 49 | 45 | 91.8367 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0206 | 99.3362 | 98.7071 | 54.3318 | 3741 | 25 | 3741 | 49 | 45 | 91.8367 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 95.2929 | 93.9216 | 96.7048 | 85.0071 | 1437 | 93 | 1438 | 49 | 29 | 59.1837 | |
| jlack-gatk | INDEL | D16_PLUS | HG002complexvar | * | 96.5938 | 96.2264 | 96.9641 | 66.5839 | 1581 | 62 | 1565 | 49 | 36 | 73.4694 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.2929 | 93.9216 | 96.7048 | 85.0071 | 1437 | 93 | 1438 | 49 | 29 | 59.1837 | |
| gduggal-bwavard | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 26.8657 | 91.2189 | 0 | 0 | 18 | 49 | 21 | 42.8571 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m2_e0 | * | 55.4705 | 58.8889 | 52.4272 | 93.3117 | 53 | 37 | 54 | 49 | 21 | 42.8571 | |
| eyeh-varpipe | SNP | ti | * | hetalt | 99.5363 | 99.8282 | 99.2460 | 38.4448 | 581 | 1 | 6450 | 49 | 47 | 95.9184 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 72.9338 | 86.2903 | 63.1579 | 90.1262 | 107 | 17 | 84 | 49 | 4 | 8.1633 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.5407 | 88.2533 | 99.5021 | 62.9815 | 9782 | 1302 | 9792 | 49 | 16 | 32.6531 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 33.0430 | 20.5706 | 83.9344 | 60.8974 | 137 | 529 | 256 | 49 | 49 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 33.0430 | 20.5706 | 83.9344 | 60.8974 | 137 | 529 | 256 | 49 | 49 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l250_m0_e0 | * | 97.1993 | 96.7213 | 97.6821 | 93.5570 | 2065 | 70 | 2065 | 49 | 15 | 30.6122 | |
| gduggal-bwavard | SNP | * | segdup | homalt | 98.6646 | 97.8125 | 99.5315 | 88.9251 | 10508 | 235 | 10411 | 49 | 47 | 95.9184 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 53.8091 | 57.5758 | 50.5051 | 84.7692 | 76 | 56 | 50 | 49 | 21 | 42.8571 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 85.1064 | 100.0000 | 74.0741 | 95.3356 | 1 | 0 | 140 | 49 | 36 | 73.4694 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 83.2380 | 80.8271 | 85.7971 | 78.5980 | 215 | 51 | 296 | 49 | 48 | 97.9592 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 75.4767 | 66.4516 | 87.3385 | 73.7805 | 103 | 52 | 338 | 49 | 46 | 93.8776 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 81.7312 | 69.6640 | 98.8549 | 64.9750 | 4230 | 1842 | 4230 | 49 | 43 | 87.7551 | |
| jmaeng-gatk | INDEL | I16_PLUS | * | het | 97.7761 | 97.3878 | 98.1675 | 76.4716 | 2647 | 71 | 2625 | 49 | 8 | 16.3265 | |
| jmaeng-gatk | INDEL | I6_15 | HG002complexvar | * | 97.9019 | 96.8698 | 98.9563 | 57.2482 | 4642 | 150 | 4646 | 49 | 49 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | * | * | 92.5185 | 90.0000 | 95.1819 | 96.3145 | 9 | 1 | 968 | 49 | 5 | 10.2041 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.9234 | 93.0786 | 98.9476 | 63.4393 | 4653 | 346 | 4607 | 49 | 36 | 73.4694 | |