PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14751-14800 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.2861 | 96.5348 | 98.0492 | 68.8578 | 2563 | 92 | 2513 | 50 | 38 | 76.0000 | |
| ckim-vqsr | INDEL | * | map_l150_m2_e1 | * | 96.1308 | 95.7609 | 96.5035 | 93.5147 | 1378 | 61 | 1380 | 50 | 7 | 14.0000 | |
| ckim-vqsr | INDEL | I1_5 | HG002complexvar | * | 99.3737 | 98.9030 | 99.8489 | 56.8918 | 32997 | 366 | 33042 | 50 | 41 | 82.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_siren | * | 98.6263 | 98.6682 | 98.5844 | 80.4104 | 3482 | 47 | 3482 | 50 | 22 | 44.0000 | |
| egarrison-hhga | INDEL | D6_15 | * | hetalt | 65.0139 | 48.4952 | 98.5994 | 42.7885 | 3964 | 4210 | 3520 | 50 | 43 | 86.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.5608 | 96.7376 | 96.3847 | 75.3388 | 1364 | 46 | 1333 | 50 | 40 | 80.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | HG002compoundhet | hetalt | 97.1229 | 94.8287 | 99.5310 | 57.0294 | 10599 | 578 | 10611 | 50 | 44 | 88.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.3878 | 94.0484 | 96.7658 | 60.9497 | 1517 | 96 | 1496 | 50 | 29 | 58.0000 | |
| ndellapenna-hhga | SNP | * | map_l125_m0_e0 | het | 98.3855 | 97.2047 | 99.5955 | 74.1909 | 12310 | 354 | 12310 | 50 | 23 | 46.0000 | |
| ltrigg-rtg2 | SNP | ti | HG002complexvar | homalt | 99.9240 | 99.8739 | 99.9741 | 18.1301 | 193219 | 244 | 193117 | 50 | 49 | 98.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 51.7369 | 92.5926 | 35.8974 | 95.7470 | 25 | 2 | 28 | 50 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e1 | * | 90.1766 | 83.9608 | 97.3863 | 87.9176 | 1628 | 311 | 1863 | 50 | 36 | 72.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.3468 | 96.4762 | 98.2332 | 41.6856 | 1013 | 37 | 2780 | 50 | 22 | 44.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 47.1671 | 52.9412 | 42.5287 | 85.0772 | 9 | 8 | 37 | 50 | 1 | 2.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.0206 | 93.2787 | 98.9286 | 61.7804 | 4663 | 336 | 4617 | 50 | 35 | 70.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.0206 | 93.2787 | 98.9286 | 61.7804 | 4663 | 336 | 4617 | 50 | 35 | 70.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | * | hetalt | 97.5461 | 95.7915 | 99.3661 | 40.2288 | 7830 | 344 | 7838 | 50 | 50 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | segdup | homalt | 99.7490 | 99.9628 | 99.5362 | 88.2598 | 10739 | 4 | 10731 | 50 | 50 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 92.8302 | 90.7619 | 94.9950 | 53.7071 | 953 | 97 | 949 | 50 | 49 | 98.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.2696 | 94.2821 | 98.3427 | 70.1080 | 2968 | 180 | 2967 | 50 | 2 | 4.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.0556 | 99.2366 | 91.2127 | 73.6696 | 520 | 4 | 519 | 50 | 40 | 80.0000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 48.4043 | 74.2857 | 35.8974 | 92.5643 | 26 | 9 | 28 | 50 | 16 | 32.0000 | |
| ckim-dragen | INDEL | D16_PLUS | HG002complexvar | * | 97.0671 | 97.2002 | 96.9344 | 67.2029 | 1597 | 46 | 1581 | 50 | 37 | 74.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.8396 | 97.2973 | 83.4437 | 59.6257 | 252 | 7 | 252 | 50 | 48 | 96.0000 | |
| ckim-dragen | INDEL | I6_15 | HG002complexvar | homalt | 97.8586 | 99.7529 | 96.0349 | 55.1086 | 1211 | 3 | 1211 | 50 | 50 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.7070 | 97.8532 | 99.5759 | 69.9799 | 5971 | 131 | 11741 | 50 | 42 | 84.0000 | |
| cchapple-custom | SNP | tv | HG002compoundhet | het | 98.8352 | 98.5020 | 99.1705 | 51.5239 | 4603 | 70 | 5978 | 50 | 33 | 66.0000 | |
| ciseli-custom | INDEL | * | func_cds | het | 79.1762 | 80.8411 | 77.5785 | 43.6869 | 173 | 41 | 173 | 50 | 20 | 40.0000 | |
| ckim-gatk | INDEL | I1_5 | map_siren | het | 97.9415 | 98.8102 | 97.0879 | 85.2732 | 1661 | 20 | 1667 | 50 | 5 | 10.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.4742 | 68.8666 | 91.1972 | 34.5622 | 480 | 217 | 518 | 50 | 47 | 94.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.9390 | 96.8944 | 75.6098 | 24.9084 | 156 | 5 | 155 | 50 | 50 | 100.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.3731 | 95.8437 | 0 | 0 | 17 | 50 | 8 | 16.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m1_e0 | homalt | 58.8727 | 75.0000 | 48.4536 | 84.8437 | 48 | 16 | 47 | 50 | 47 | 94.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e0 | homalt | 59.3789 | 75.3846 | 48.9796 | 85.4599 | 49 | 16 | 48 | 50 | 47 | 94.0000 | |
| ciseli-custom | INDEL | D6_15 | segdup | * | 68.3802 | 65.4450 | 71.5909 | 94.3207 | 125 | 66 | 126 | 50 | 32 | 64.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 45.6848 | 32.5820 | 76.4151 | 81.0545 | 159 | 329 | 162 | 50 | 35 | 70.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 70.5882 | 92.9577 | 56.8966 | 51.0549 | 66 | 5 | 66 | 50 | 50 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 91.7244 | 88.6029 | 95.0739 | 89.7371 | 964 | 124 | 965 | 50 | 5 | 10.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e0 | * | 91.8425 | 88.6264 | 95.3008 | 90.1645 | 1013 | 130 | 1014 | 50 | 5 | 10.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e1 | * | 91.8963 | 88.6776 | 95.3575 | 90.2011 | 1026 | 131 | 1027 | 50 | 5 | 10.0000 | |
| asubramanian-gatk | INDEL | I1_5 | HG002compoundhet | hetalt | 96.2877 | 93.2540 | 99.5255 | 58.2114 | 10423 | 754 | 10487 | 50 | 46 | 92.0000 | |
| asubramanian-gatk | INDEL | I6_15 | HG002compoundhet | het | 83.5162 | 93.2692 | 75.6098 | 84.8597 | 194 | 14 | 155 | 50 | 46 | 92.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1387 | 99.5421 | 98.7386 | 58.2561 | 3913 | 18 | 3914 | 50 | 1 | 2.0000 | |
| anovak-vg | INDEL | I1_5 | map_l150_m0_e0 | homalt | 68.1120 | 89.5522 | 54.9550 | 90.0627 | 60 | 7 | 61 | 50 | 47 | 94.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | HG002complexvar | * | 98.3311 | 97.7254 | 98.9445 | 57.6259 | 4683 | 109 | 4687 | 50 | 49 | 98.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 88.7453 | 86.9963 | 90.5660 | 76.6520 | 475 | 71 | 480 | 50 | 32 | 64.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 65.0593 | 53.4989 | 82.9932 | 36.5011 | 237 | 206 | 244 | 50 | 34 | 68.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.3750 | 95.5710 | 99.2485 | 52.6679 | 6603 | 306 | 6603 | 50 | 45 | 90.0000 | |
| astatham-gatk | INDEL | I6_15 | HG002compoundhet | het | 85.7861 | 97.5962 | 76.5258 | 84.3382 | 203 | 5 | 163 | 50 | 49 | 98.0000 | |
| astatham-gatk | SNP | * | map_l150_m0_e0 | het | 90.3676 | 82.9471 | 99.2462 | 85.7275 | 6586 | 1354 | 6583 | 50 | 12 | 24.0000 | |