PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14601-14650 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | * | map_l100_m2_e0 | het | 63.7840 | 46.8782 | 99.7614 | 87.0574 | 21751 | 24648 | 21745 | 52 | 14 | 26.9231 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e1 | het | 64.0057 | 47.1171 | 99.7652 | 87.0062 | 22097 | 24801 | 22091 | 52 | 14 | 26.9231 | |
| anovak-vg | SNP | tv | func_cds | * | 98.2741 | 97.7580 | 98.7957 | 36.4158 | 4273 | 98 | 4266 | 52 | 32 | 61.5385 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.8059 | 94.1587 | 99.6062 | 31.3760 | 12960 | 804 | 13154 | 52 | 51 | 98.0769 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.7892 | 94.1206 | 99.6136 | 34.1069 | 13207 | 825 | 13406 | 52 | 51 | 98.0769 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.0321 | 95.0607 | 99.0869 | 48.8550 | 5639 | 293 | 5643 | 52 | 49 | 94.2308 | |
| raldana-dualsentieon | SNP | * | map_l250_m0_e0 | het | 96.7528 | 96.9456 | 96.5608 | 92.4896 | 1460 | 46 | 1460 | 52 | 1 | 1.9231 | |
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | * | 98.6080 | 98.4427 | 98.7737 | 78.9854 | 4109 | 65 | 4108 | 51 | 2 | 3.9216 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.8158 | 98.6325 | 98.9998 | 83.5908 | 5049 | 70 | 5048 | 51 | 37 | 72.5490 | |
| rpoplin-dv42 | INDEL | I1_5 | * | hetalt | 96.4651 | 93.5954 | 99.5163 | 62.8772 | 10478 | 717 | 10493 | 51 | 48 | 94.1176 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.9102 | 91.6918 | 92.1296 | 76.9886 | 607 | 55 | 597 | 51 | 42 | 82.3529 | |
| rpoplin-dv42 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.8560 | 99.8560 | 99.8559 | 61.0125 | 35368 | 51 | 35352 | 51 | 31 | 60.7843 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.5900 | 96.6582 | 98.5399 | 68.6164 | 3442 | 119 | 3442 | 51 | 43 | 84.3137 | |
| raldana-dualsentieon | INDEL | I6_15 | HG002compoundhet | het | 75.0365 | 79.3269 | 71.1864 | 85.5155 | 165 | 43 | 126 | 51 | 51 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.4861 | 99.5813 | 99.3911 | 58.2577 | 8325 | 35 | 8325 | 51 | 50 | 98.0392 | |
| hfeng-pmm3 | SNP | * | map_l250_m1_e0 | het | 98.6931 | 98.4648 | 98.9225 | 88.7103 | 4682 | 73 | 4682 | 51 | 3 | 5.8824 | |
| hfeng-pmm3 | SNP | tv | map_l125_m0_e0 | * | 99.1700 | 99.1102 | 99.2298 | 75.2152 | 6572 | 59 | 6571 | 51 | 7 | 13.7255 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4911 | 99.8188 | 99.1656 | 57.1479 | 6061 | 11 | 6061 | 51 | 49 | 96.0784 | |
| jlack-gatk | INDEL | D1_5 | * | hetalt | 95.0041 | 90.9322 | 99.4577 | 62.5612 | 9316 | 929 | 9354 | 51 | 46 | 90.1961 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1869 | 99.2134 | 99.1605 | 78.4314 | 6054 | 48 | 6024 | 51 | 24 | 47.0588 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e0 | * | 96.2945 | 98.3664 | 94.3080 | 90.1657 | 843 | 14 | 845 | 51 | 5 | 9.8039 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.1839 | 94.9785 | 99.4942 | 28.3420 | 9949 | 526 | 10032 | 51 | 50 | 98.0392 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.4016 | 97.3287 | 99.4985 | 47.5257 | 10129 | 278 | 10118 | 51 | 47 | 92.1569 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.8127 | 99.4294 | 98.2036 | 48.6526 | 2788 | 16 | 2788 | 51 | 50 | 98.0392 | |
| hfeng-pmm2 | INDEL | I1_5 | HG002complexvar | * | 99.5522 | 99.2597 | 99.8464 | 56.6743 | 33116 | 247 | 33159 | 51 | 38 | 74.5098 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.4861 | 99.5813 | 99.3911 | 58.2577 | 8325 | 35 | 8325 | 51 | 50 | 98.0392 | |
| hfeng-pmm1 | INDEL | I16_PLUS | * | homalt | 98.2323 | 99.6797 | 96.8264 | 69.2499 | 1556 | 5 | 1556 | 51 | 49 | 96.0784 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 88.1401 | 80.0632 | 98.0294 | 59.0247 | 2534 | 631 | 2537 | 51 | 48 | 94.1176 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 80.8933 | 68.5041 | 98.7531 | 57.3514 | 4039 | 1857 | 4039 | 51 | 49 | 96.0784 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 80.8933 | 68.5041 | 98.7531 | 57.3514 | 4039 | 1857 | 4039 | 51 | 49 | 96.0784 | |
| gduggal-bwavard | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 27.1429 | 91.0026 | 0 | 0 | 19 | 51 | 23 | 45.0980 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m2_e1 | * | 55.1438 | 57.7320 | 52.7778 | 93.1122 | 56 | 41 | 57 | 51 | 23 | 45.0980 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 76.5760 | 87.0968 | 68.3230 | 91.5441 | 108 | 16 | 110 | 51 | 5 | 9.8039 | |
| gduggal-bwaplat | INDEL | D1_5 | HG002complexvar | hetalt | 80.5939 | 70.0444 | 94.8847 | 81.8132 | 947 | 405 | 946 | 51 | 50 | 98.0392 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 75.2576 | 62.8247 | 93.8257 | 69.9746 | 774 | 458 | 775 | 51 | 20 | 39.2157 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.7133 | 96.8750 | 78.4810 | 46.7416 | 186 | 6 | 186 | 51 | 50 | 98.0392 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.0420 | 87.8244 | 94.5043 | 58.5344 | 880 | 122 | 877 | 51 | 34 | 66.6667 | |
| egarrison-hhga | SNP | ti | map_l125_m2_e0 | * | 99.4693 | 99.1110 | 99.8302 | 70.7438 | 29989 | 269 | 29989 | 51 | 24 | 47.0588 | |
| dgrover-gatk | SNP | * | HG002compoundhet | * | 99.8063 | 99.8102 | 99.8025 | 41.2435 | 25773 | 49 | 25766 | 51 | 36 | 70.5882 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 75.7737 | 66.0714 | 88.8158 | 57.1831 | 407 | 209 | 405 | 51 | 47 | 92.1569 | |
| ckim-vqsr | SNP | ti | map_l150_m0_e0 | * | 60.7533 | 43.9130 | 98.5441 | 93.9394 | 3452 | 4409 | 3452 | 51 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l150_m0_e0 | het | 72.0358 | 56.8570 | 98.2706 | 94.0511 | 2898 | 2199 | 2898 | 51 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.9211 | 94.3694 | 99.6146 | 31.5700 | 12989 | 775 | 13182 | 51 | 50 | 98.0392 | |
| egarrison-hhga | INDEL | I16_PLUS | HG002complexvar | * | 92.4901 | 89.3812 | 95.8231 | 64.9842 | 1170 | 139 | 1170 | 51 | 30 | 58.8235 | |
| ckim-isaac | SNP | * | map_l150_m2_e0 | * | 70.6023 | 54.6496 | 99.7079 | 77.9961 | 17407 | 14445 | 17408 | 51 | 12 | 23.5294 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.1462 | 92.9163 | 99.6087 | 28.2901 | 12789 | 975 | 12983 | 51 | 51 | 100.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.0845 | 92.7950 | 99.6157 | 30.7178 | 13021 | 1011 | 13220 | 51 | 51 | 100.0000 | |
| ckim-vqsr | INDEL | * | map_l125_m1_e0 | het | 95.6747 | 95.2060 | 96.1480 | 92.4743 | 1271 | 64 | 1273 | 51 | 5 | 9.8039 | |
| ckim-vqsr | INDEL | * | map_l125_m2_e0 | het | 95.6234 | 94.9676 | 96.2882 | 93.0044 | 1321 | 70 | 1323 | 51 | 5 | 9.8039 | |
| ckim-vqsr | INDEL | * | map_l125_m2_e1 | het | 95.6019 | 94.8864 | 96.3283 | 93.0623 | 1336 | 72 | 1338 | 51 | 5 | 9.8039 | |