PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14201-14250 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | * | map_l125_m2_e1 | homalt | 99.1340 | 98.5911 | 99.6828 | 71.9295 | 17285 | 247 | 17285 | 55 | 40 | 72.7273 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.6549 | 93.5593 | 97.8465 | 65.3460 | 2484 | 171 | 2499 | 55 | 26 | 47.2727 | |
| jli-custom | INDEL | D1_5 | HG002compoundhet | het | 97.4993 | 98.1481 | 96.8589 | 75.3067 | 1696 | 32 | 1696 | 55 | 50 | 90.9091 | |
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.3143 | 94.5890 | 94.0412 | 72.3901 | 909 | 52 | 868 | 55 | 49 | 89.0909 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5394 | 97.9595 | 99.1262 | 72.9162 | 6289 | 131 | 6239 | 55 | 36 | 65.4545 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5394 | 97.9595 | 99.1262 | 72.9162 | 6289 | 131 | 6239 | 55 | 36 | 65.4545 | |
| ltrigg-rtg1 | SNP | * | map_l150_m2_e1 | het | 98.4558 | 97.2204 | 99.7229 | 66.1731 | 19797 | 566 | 19797 | 55 | 9 | 16.3636 | |
| ltrigg-rtg1 | SNP | ti | HG002complexvar | homalt | 99.9028 | 99.8341 | 99.9715 | 18.2456 | 193142 | 321 | 193049 | 55 | 54 | 98.1818 | |
| ltrigg-rtg1 | SNP | ti | func_cds | * | 99.7465 | 99.8912 | 99.6022 | 21.3270 | 13772 | 15 | 13771 | 55 | 1 | 1.8182 | |
| ltrigg-rtg1 | SNP | ti | func_cds | het | 99.6011 | 99.8471 | 99.3563 | 21.6630 | 8491 | 13 | 8490 | 55 | 1 | 1.8182 | |
| jmaeng-gatk | SNP | tv | map_l250_m1_e0 | * | 67.4516 | 51.9456 | 96.1538 | 96.4328 | 1375 | 1272 | 1375 | 55 | 2 | 3.6364 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 20.6825 | 16.8919 | 26.6667 | 71.6981 | 25 | 123 | 20 | 55 | 29 | 52.7273 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e0 | * | 82.6518 | 77.8420 | 88.0952 | 95.5115 | 404 | 115 | 407 | 55 | 2 | 3.6364 | |
| gduggal-snapfb | SNP | * | map_l125_m1_e0 | homalt | 97.7543 | 95.9184 | 99.6620 | 74.9969 | 16215 | 690 | 16216 | 55 | 21 | 38.1818 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e0 | homalt | 97.8012 | 96.0000 | 99.6714 | 76.3723 | 16680 | 695 | 16681 | 55 | 21 | 38.1818 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e1 | homalt | 97.8213 | 96.0358 | 99.6744 | 76.3853 | 16837 | 695 | 16838 | 55 | 21 | 38.1818 | |
| gduggal-snapfb | SNP | * | segdup | homalt | 99.6002 | 99.7114 | 99.4891 | 90.4625 | 10712 | 31 | 10711 | 55 | 17 | 30.9091 | |
| gduggal-snapplat | INDEL | * | map_l150_m0_e0 | het | 78.1739 | 73.9003 | 82.9721 | 96.4230 | 252 | 89 | 268 | 55 | 9 | 16.3636 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e1 | * | 70.7555 | 70.3125 | 71.2042 | 85.5303 | 90 | 38 | 136 | 55 | 37 | 67.2727 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e1 | * | 96.0083 | 96.7156 | 95.3112 | 86.9753 | 1119 | 38 | 1118 | 55 | 9 | 16.3636 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 70.1721 | 68.3616 | 72.0812 | 51.2376 | 121 | 56 | 142 | 55 | 50 | 90.9091 | |
| gduggal-snapvard | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 22.5352 | 85.7143 | 0 | 0 | 16 | 55 | 6 | 10.9091 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.3619 | 97.0541 | 95.6795 | 75.5568 | 1219 | 37 | 1218 | 55 | 35 | 63.6364 | |
| raldana-dualsentieon | INDEL | D1_5 | HG002complexvar | * | 99.1616 | 98.5022 | 99.8299 | 57.5831 | 32225 | 490 | 32276 | 55 | 41 | 74.5455 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.4197 | 99.4416 | 99.3979 | 75.9193 | 9082 | 51 | 9080 | 55 | 15 | 27.2727 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.9354 | 94.1445 | 95.7397 | 51.4296 | 1238 | 77 | 1236 | 55 | 43 | 78.1818 | |
| rpoplin-dv42 | SNP | ti | map_l250_m1_e0 | * | 98.4440 | 98.1000 | 98.7904 | 87.6879 | 4492 | 87 | 4492 | 55 | 36 | 65.4545 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.4197 | 99.4416 | 99.3979 | 75.9193 | 9082 | 51 | 9080 | 55 | 15 | 27.2727 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.4938 | 92.1283 | 85.1351 | 58.7514 | 316 | 27 | 315 | 55 | 42 | 76.3636 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 5.7971 | 3.3816 | 20.2899 | 80.2292 | 14 | 400 | 14 | 55 | 47 | 85.4545 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.4719 | 41.6667 | 15.3846 | 67.8218 | 10 | 14 | 10 | 55 | 52 | 94.5455 | |
| ckim-dragen | INDEL | I6_15 | HG002complexvar | * | 98.1726 | 97.5167 | 98.8375 | 57.3399 | 4673 | 119 | 4676 | 55 | 54 | 98.1818 | |
| cchapple-custom | INDEL | * | map_l125_m0_e0 | * | 94.9271 | 95.9184 | 93.9560 | 89.0203 | 846 | 36 | 855 | 55 | 11 | 20.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.2111 | 96.5725 | 97.8583 | 68.9818 | 2564 | 91 | 2513 | 55 | 49 | 89.0909 | |
| ckim-gatk | INDEL | I1_5 | HG002complexvar | * | 99.4404 | 99.0498 | 99.8341 | 56.8511 | 33046 | 317 | 33092 | 55 | 41 | 74.5455 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.2866 | 71.4286 | 89.0873 | 67.9389 | 440 | 176 | 449 | 55 | 49 | 89.0909 | |
| egarrison-hhga | INDEL | D1_5 | HG002compoundhet | hetalt | 77.6385 | 63.8117 | 99.1149 | 65.8609 | 6519 | 3697 | 6159 | 55 | 48 | 87.2727 | |
| ckim-vqsr | SNP | tv | map_l125_m0_e0 | * | 63.5371 | 46.9462 | 98.2639 | 92.6176 | 3113 | 3518 | 3113 | 55 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | map_l125_m0_e0 | het | 74.6025 | 60.2363 | 97.9675 | 92.7270 | 2651 | 1750 | 2651 | 55 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.9381 | 98.9362 | 93.1164 | 62.2579 | 744 | 8 | 744 | 55 | 55 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 82.4178 | 78.4483 | 86.8106 | 63.9896 | 364 | 100 | 362 | 55 | 35 | 63.6364 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 95.1176 | 93.9650 | 96.2988 | 73.4406 | 1448 | 93 | 1431 | 55 | 36 | 65.4545 | |
| eyeh-varpipe | INDEL | * | map_l125_m2_e1 | het | 96.7368 | 96.5199 | 96.9546 | 85.7560 | 1359 | 49 | 1751 | 55 | 32 | 58.1818 | |
| ckim-vqsr | SNP | ti | HG002complexvar | het | 99.1493 | 98.3302 | 99.9822 | 17.7224 | 309510 | 5256 | 309462 | 55 | 18 | 32.7273 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | * | * | 96.9914 | 94.9292 | 99.1450 | 56.0917 | 6440 | 344 | 6378 | 55 | 35 | 63.6364 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002complexvar | hetalt | 95.1803 | 94.0828 | 96.3038 | 77.4750 | 1272 | 80 | 1433 | 55 | 54 | 98.1818 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.6465 | 93.3333 | 95.9971 | 67.9047 | 1316 | 94 | 1319 | 55 | 15 | 27.2727 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.3352 | 97.2892 | 99.4041 | 71.1873 | 9044 | 252 | 9174 | 55 | 55 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | HG002compoundhet | het | 99.2921 | 98.9773 | 99.6090 | 42.0270 | 14033 | 145 | 14011 | 55 | 13 | 23.6364 | |
| qzeng-custom | SNP | ti | HG002compoundhet | homalt | 98.8966 | 98.7963 | 98.9971 | 38.0829 | 7305 | 89 | 5429 | 55 | 41 | 74.5455 | |