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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 279 280 281 282 283 284 285 286 287 ... 1720 1721 » 14101-14150 / 86044 show all
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	80.0548	89.0909	72.6829	91.6052	147	18	149	56	9	16.0714
gduggal-bwaplat	INDEL	D6_15	HG002compoundhet	homalt	37.8738	75.0000	25.3333	81.1558	18	6	19	56	53	94.6429
gduggal-bwaplat	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	87.1382	78.3947	98.0769	64.9494	2852	786	2856	56	50	89.2857
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	95.1577	91.3256	99.3255	38.6854	2990	284	8246	56	45	80.3571
gduggal-bwafb	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	85.3531	80.8576	90.3780	61.9856	528	125	526	56	54	96.4286
eyeh-varpipe	SNP	tv	map_l250_m1_e0	*	98.7000	99.5089	97.9042	90.2532	2634	13	2616	56	6	10.7143
eyeh-varpipe	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	homalt	38.3408	90.4762	24.3243	23.7113	19	2	18	56	55	98.2143
raldana-dualsentieon	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.1995	96.8094	99.6302	71.4676	15080	497	15087	56	47	83.9286
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.6737	94.1848	99.2978	59.9146	7920	489	7919	56	51	91.0714
rpoplin-dv42	SNP	*	map_l100_m1_e0	homalt	99.6291	99.4667	99.7919	61.1512	26859	144	26860	56	52	92.8571
rpoplin-dv42	SNP	ti	map_l250_m2_e0	*	98.5577	98.2428	98.8746	88.2672	4920	88	4920	56	37	66.0714
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7238	99.6461	99.8015	61.5050	28160	100	28162	56	44	78.5714
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.0240	99.1401	98.9082	42.6607	5073	44	5073	56	56	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.1031	99.1903	99.0160	51.1670	5635	46	5635	56	56	100.0000
hfeng-pmm1	SNP	ti	segdup	het	99.6179	99.7007	99.5352	89.0346	11994	36	11992	56	0	0.0000
hfeng-pmm1	SNP	tv	map_l125_m1_e0	*	99.4714	99.2945	99.6491	69.3117	15903	113	15901	56	16	28.5714
hfeng-pmm1	SNP	tv	map_l125_m2_e0	*	99.4866	99.3147	99.6592	71.0071	16376	113	16374	56	16	28.5714
hfeng-pmm1	SNP	tv	map_l125_m2_e1	*	99.4888	99.3156	99.6626	71.0607	16543	114	16541	56	16	28.5714
hfeng-pmm2	SNP	ti	HG002complexvar	het	99.8373	99.6928	99.9822	16.6591	313799	967	313749	56	7	12.5000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	93.0360	94.2922	91.8129	79.4100	826	50	628	56	55	98.2143
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.0795	96.5665	99.6406	67.0543	15525	552	15525	56	32	57.1429
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.0795	96.5665	99.6406	67.0543	15525	552	15525	56	32	57.1429
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.3251	99.4893	99.1616	77.5985	6623	34	6623	56	11	19.6429
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.4586	99.0170	97.9065	84.2545	2619	26	2619	56	14	25.0000
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	94.2768	89.5307	99.5544	31.1699	12323	1441	12511	56	50	89.2857
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.2610	89.4954	99.5627	34.0219	12558	1474	12751	56	50	89.2857
jlack-gatk	INDEL	*	map_l250_m1_e0	*	89.9390	96.7213	84.0456	96.8466	295	10	295	56	4	7.1429
jlack-gatk	INDEL	*	map_l250_m2_e0	*	90.6780	96.9789	85.1459	97.0399	321	10	321	56	4	7.1429
jlack-gatk	INDEL	*	map_l250_m2_e1	*	90.7303	96.9970	85.2243	97.1042	323	10	323	56	4	7.1429
hfeng-pmm1	INDEL	D1_5	HG002compoundhet	homalt	90.5363	98.6254	83.6735	73.7366	287	4	287	56	56	100.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.4624	99.5933	99.3319	58.5091	8326	34	8326	56	56	100.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4624	99.5933	99.3319	58.5091	8326	34	8326	56	56	100.0000
ckim-isaac	SNP	*	HG002complexvar	homalt	95.6391	91.6604	99.9788	17.3239	264509	24066	264563	56	45	80.3571
ckim-vqsr	INDEL	*	map_l125_m1_e0	*	96.8785	96.4404	97.3206	91.1117	2032	75	2034	56	8	14.2857
dgrover-gatk	INDEL	*	HG002compoundhet	hetalt	96.9439	94.2772	99.7659	51.7927	23739	1441	23863	56	55	98.2143
egarrison-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	96.3335	96.2182	96.4490	61.4990	1552	61	1521	56	30	53.5714
egarrison-hhga	SNP	*	map_l100_m0_e0	het	99.1151	98.5051	99.7326	69.3594	20888	317	20889	56	24	42.8571
egarrison-hhga	SNP	tv	HG002complexvar	homalt	99.8748	99.8086	99.9410	22.7459	94929	182	94938	56	46	82.1429
egarrison-hhga	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	91.6796	92.5249	90.8497	49.7124	557	45	556	56	25	44.6429
qzeng-custom	INDEL	D1_5	map_siren	het	92.9621	88.8889	97.4265	85.9785	2024	253	2120	56	32	57.1429
ltrigg-rtg2	INDEL	D1_5	HG002compoundhet	het	97.0089	97.1644	96.8539	67.7653	1679	49	1724	56	27	48.2143
ltrigg-rtg2	INDEL	I6_15	*	homalt	98.7906	98.4933	99.0897	41.6927	6145	94	6096	56	49	87.5000
mlin-fermikit	SNP	tv	map_l150_m1_e0	het	53.4835	36.7982	97.8528	67.3388	2556	4390	2552	56	0	0.0000
ndellapenna-hhga	SNP	tv	map_l100_m1_e0	*	99.2885	98.8123	99.7692	62.3765	24210	291	24210	56	24	42.8571
qzeng-custom	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het		0.0000	0.0000	54.0984	0	0	0	56	0	0.0000
ndellapenna-hhga	INDEL	D1_5	HG002compoundhet	hetalt	77.8263	64.0760	99.0905	66.4524	6546	3670	6101	56	47	83.9286
ndellapenna-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	77.0538	84.4720	70.8333	31.6726	136	25	136	56	35	62.5000
ciseli-custom	INDEL	C1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	0.0000	0.0000	25.3333	95.0166	0	0	19	56	7	12.5000
ciseli-custom	INDEL	D16_PLUS	HG002complexvar	het	53.6535	38.4824	88.5714	55.2511	426	681	434	56	34	60.7143
ciseli-custom	INDEL	D1_5	map_l150_m0_e0	*	71.0670	65.7439	77.3279	94.6386	190	99	191	56	18	32.1429

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