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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14051-14100 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.1138 | 99.2021 | 95.1115 | 61.2625 | 1119 | 9 | 1109 | 57 | 18 | 31.5789 | |
| ckim-dragen | INDEL | * | map_l100_m0_e0 | het | 95.6303 | 96.7679 | 94.5192 | 88.5902 | 988 | 33 | 983 | 57 | 4 | 7.0175 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 96.1577 | 0 | 0 | 19 | 57 | 8 | 14.0351 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e0 | het | 91.0865 | 87.4204 | 95.0735 | 88.4658 | 1098 | 158 | 1100 | 57 | 6 | 10.5263 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.4646 | 97.0242 | 97.9090 | 63.2516 | 1565 | 48 | 2669 | 57 | 50 | 87.7193 | |
| astatham-gatk | INDEL | * | HG002compoundhet | hetalt | 96.8345 | 94.0747 | 99.7612 | 51.5025 | 23688 | 1492 | 23812 | 57 | 56 | 98.2456 | |
| astatham-gatk | INDEL | * | map_l100_m1_e0 | het | 95.1305 | 93.0201 | 97.3389 | 86.8492 | 2079 | 156 | 2085 | 57 | 11 | 19.2982 | |
| anovak-vg | INDEL | * | map_l150_m0_e0 | homalt | 74.0771 | 78.6585 | 70.0000 | 91.3793 | 129 | 35 | 133 | 57 | 53 | 92.9825 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | * | 72.7100 | 74.5946 | 70.9184 | 96.2235 | 138 | 47 | 139 | 57 | 24 | 42.1053 | |
| asubramanian-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.1790 | 86.6893 | 98.4109 | 40.6421 | 3315 | 509 | 3530 | 57 | 49 | 85.9649 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.6299 | 98.3786 | 98.8826 | 80.6311 | 5036 | 83 | 5044 | 57 | 14 | 24.5614 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 75.6410 | 0 | 1 | 0 | 57 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 35.9551 | 0 | 0 | 0 | 57 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.8678 | 98.2992 | 99.4430 | 40.4688 | 10230 | 177 | 10177 | 57 | 24 | 42.1053 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 96.3080 | 97.8404 | 94.8229 | 62.8918 | 1042 | 23 | 1044 | 57 | 53 | 92.9825 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m1_e0 | homalt | 74.4541 | 65.8301 | 85.6784 | 74.7141 | 341 | 177 | 341 | 57 | 55 | 96.4912 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.4391 | 88.9344 | 87.9493 | 79.5592 | 434 | 54 | 416 | 57 | 55 | 96.4912 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 80.4826 | 84.6154 | 76.7347 | 91.5952 | 187 | 34 | 188 | 57 | 31 | 54.3860 | |
| mlin-fermikit | SNP | tv | segdup | homalt | 98.3960 | 98.5485 | 98.2440 | 87.6277 | 3191 | 47 | 3189 | 57 | 49 | 85.9649 | |
| qzeng-custom | SNP | ti | map_l125_m2_e1 | homalt | 83.4603 | 71.9759 | 99.3054 | 66.9858 | 8247 | 3211 | 8149 | 57 | 56 | 98.2456 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 77.1804 | 63.0915 | 99.3707 | 35.9250 | 8853 | 5179 | 9000 | 57 | 56 | 98.2456 | |
| ndellapenna-hhga | SNP | * | map_l125_m0_e0 | * | 98.7976 | 97.9108 | 99.7006 | 72.0168 | 18980 | 405 | 18980 | 57 | 29 | 50.8772 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 32.9412 | 0 | 0 | 0 | 57 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 72.9858 | 100.0000 | 57.4627 | 71.8487 | 74 | 0 | 77 | 57 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.6451 | 94.1259 | 97.2141 | 69.2007 | 2003 | 125 | 1989 | 57 | 51 | 89.4737 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m1_e0 | het | 93.8151 | 98.7552 | 89.3458 | 92.9596 | 476 | 6 | 478 | 57 | 4 | 7.0175 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.9509 | 94.7199 | 99.2895 | 61.7800 | 7965 | 444 | 7965 | 57 | 48 | 84.2105 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4232 | 99.6886 | 99.1593 | 46.1734 | 6723 | 21 | 6723 | 57 | 1 | 1.7544 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.8097 | 92.2658 | 99.6368 | 36.6287 | 15413 | 1292 | 15635 | 57 | 57 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.8097 | 92.2658 | 99.6368 | 36.6287 | 15413 | 1292 | 15635 | 57 | 57 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.7080 | 99.9112 | 97.5335 | 63.5201 | 2250 | 2 | 2254 | 57 | 32 | 56.1404 | |
| jpowers-varprowl | SNP | tv | map_l100_m2_e0 | homalt | 99.1460 | 98.9147 | 99.3785 | 68.5946 | 9114 | 100 | 9114 | 57 | 40 | 70.1754 | |
| ltrigg-rtg1 | SNP | * | HG002compoundhet | * | 98.7318 | 97.7074 | 99.7779 | 38.3623 | 25230 | 592 | 25160 | 56 | 17 | 30.3571 | |
| jli-custom | SNP | * | map_l250_m2_e1 | het | 97.7120 | 96.5426 | 98.9101 | 87.1957 | 5082 | 182 | 5082 | 56 | 24 | 42.8571 | |
| gduggal-snapvard | INDEL | I1_5 | HG002complexvar | homalt | 92.5606 | 86.5333 | 99.4905 | 33.4524 | 11637 | 1811 | 10935 | 56 | 51 | 91.0714 | |
| gduggal-snapvard | SNP | * | map_l100_m2_e0 | homalt | 98.0484 | 96.3703 | 99.7860 | 62.8472 | 26524 | 999 | 26107 | 56 | 43 | 76.7857 | |
| gduggal-snapvard | SNP | * | map_l100_m2_e1 | homalt | 98.0418 | 96.3556 | 99.7880 | 62.8493 | 26783 | 1013 | 26357 | 56 | 43 | 76.7857 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.6335 | 98.6470 | 98.6200 | 49.6901 | 4010 | 55 | 4002 | 56 | 5 | 8.9286 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 43.5045 | 31.1688 | 72.0000 | 59.1837 | 144 | 318 | 144 | 56 | 49 | 87.5000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e1 | * | 82.8676 | 78.1544 | 88.1857 | 95.5224 | 415 | 116 | 418 | 56 | 2 | 3.5714 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 47.4332 | 31.5939 | 95.1220 | 44.9136 | 1114 | 2412 | 1092 | 56 | 43 | 76.7857 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 47.4332 | 31.5939 | 95.1220 | 44.9136 | 1114 | 2412 | 1092 | 56 | 43 | 76.7857 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 60.0266 | 74.1071 | 50.4425 | 79.7491 | 83 | 29 | 57 | 56 | 18 | 32.1429 | |
| ghariani-varprowl | SNP | tv | segdup | homalt | 99.0657 | 99.8456 | 98.2979 | 91.0501 | 3233 | 5 | 3234 | 56 | 29 | 51.7857 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 51.3219 | 83.3333 | 37.0787 | 89.6149 | 35 | 7 | 33 | 56 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 47.6190 | 83.3333 | 33.3333 | 88.8149 | 30 | 6 | 28 | 56 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m1_e0 | het | 85.3147 | 96.3158 | 76.5690 | 97.3834 | 183 | 7 | 183 | 56 | 10 | 17.8571 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m0_e0 | het | 86.5934 | 97.5248 | 77.8656 | 94.0076 | 197 | 5 | 197 | 56 | 5 | 8.9286 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 70.9063 | 57.6993 | 91.9540 | 93.4617 | 637 | 467 | 640 | 56 | 12 | 21.4286 | |
| gduggal-bwafb | SNP | tv | HG002complexvar | homalt | 99.8685 | 99.7960 | 99.9410 | 22.9952 | 94917 | 194 | 94931 | 56 | 49 | 87.5000 | |