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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 274 275 276 277 278 279 280 281 282 ... 1720 1721 » 13851-13900 / 86044 show all
ghariani-varprowl	INDEL	*	map_l250_m2_e1	het	86.0759	96.6825	77.5665	97.5340	204	7	204	59	10	16.9492
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	55.3485	41.4226	83.3803	72.9627	297	420	296	59	57	96.6102
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	58.3031	43.3824	88.8679	72.0464	472	616	471	59	57	96.6102
ghariani-varprowl	INDEL	D1_5	map_l150_m0_e0	*	88.6400	95.8478	82.4405	93.2094	277	12	277	59	6	10.1695
gduggal-snapplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	84.1998	75.5674	95.0586	89.6740	1132	366	1135	59	25	42.3729
gduggal-snapvard	INDEL	C1_5	map_l125_m1_e0	*	0.0000	0.0000	43.8095	95.8167	0	0	46	59	5	8.4746
gduggal-snapvard	INDEL	C1_5	map_l125_m1_e0	het	0.0000	0.0000	36.5591	95.7515	0	0	34	59	5	8.4746
gduggal-snapvard	INDEL	D16_PLUS	HG002compoundhet	*	3.4436	1.7941	42.7184	52.9680	42	2299	44	59	35	59.3220
gduggal-snapvard	INDEL	D16_PLUS	HG002compoundhet	het	7.2324	3.9506	42.7184	52.9680	16	389	44	59	35	59.3220
gduggal-snapplat	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	51.0807	34.9679	94.7321	49.3900	1091	2029	1061	59	45	76.2712
ghariani-varprowl	INDEL	I1_5	map_l125_m2_e1	*	94.3117	95.2874	93.3559	90.0716	829	41	829	59	21	35.5932
ghariani-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	82.0654	92.0904	74.0088	72.2494	163	14	168	59	57	96.6102
ghariani-varprowl	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.4868	99.6732	95.3942	70.2853	1220	4	1222	59	30	50.8475
astatham-gatk	SNP	*	map_l125_m0_e0	het	89.5045	81.3803	99.4306	82.1625	10306	2358	10303	59	18	30.5085
anovak-vg	INDEL	D1_5	map_l150_m0_e0	het	78.2898	82.6733	74.3478	93.3870	167	35	171	59	25	42.3729
astatham-gatk	INDEL	*	map_l100_m2_e0	het	95.1270	93.0212	97.3303	87.5556	2146	161	2151	59	12	20.3390
astatham-gatk	INDEL	*	map_l100_m2_e1	het	95.0891	92.9151	97.3672	87.6413	2177	166	2182	59	12	20.3390
bgallagher-sentieon	INDEL	*	map_l100_m2_e0	het	98.0419	98.6129	97.4776	86.6167	2275	32	2280	59	11	18.6441
bgallagher-sentieon	INDEL	*	map_l100_m2_e1	het	98.0718	98.6342	97.5158	86.6842	2311	32	2316	59	11	18.6441
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	92.3833	99.2084	86.4368	60.3102	376	3	376	59	59	100.0000
asubramanian-gatk	INDEL	D1_5	map_l100_m1_e0	*	92.8980	89.5022	96.5618	87.1490	1654	194	1657	59	7	11.8644
asubramanian-gatk	INDEL	D1_5	map_siren	het	93.3358	89.7672	97.1998	84.8319	2044	233	2048	59	5	8.4746
asubramanian-gatk	INDEL	I6_15	HG002compoundhet	hetalt	94.9935	91.0859	99.2515	30.1736	7776	761	7823	59	55	93.2203
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.7706	100.0000	97.5710	56.1473	2370	0	2370	59	59	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.8715	98.1383	99.6157	72.7478	15287	290	15293	59	49	83.0508
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.7240	96.4410	99.0416	63.3898	6097	225	6097	59	50	84.7458
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.7240	96.4410	99.0416	63.3898	6097	225	6097	59	50	84.7458
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.9536	94.8907	99.1081	52.4443	6556	353	6556	59	54	91.5254
rpoplin-dv42	INDEL	*	map_l100_m2_e0	*	97.9477	97.5088	98.3906	98.2302	3601	92	3607	59	27	45.7627
rpoplin-dv42	INDEL	I1_5	HG002compoundhet	homalt	90.7042	97.8723	84.5144	83.9037	322	7	322	59	58	98.3051
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	96.0096	95.7223	96.2986	71.4542	1544	69	1535	59	56	94.9153
rpoplin-dv42	SNP	tv	HG002complexvar	het	99.8928	99.8249	99.9608	21.2882	150467	264	150382	59	46	77.9661
jmaeng-gatk	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.6913	98.9362	92.6526	62.5292	744	8	744	59	59	100.0000
jmaeng-gatk	INDEL	D1_5	map_l150_m2_e0	*	95.3628	98.1651	92.7160	92.5428	749	14	751	59	5	8.4746
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.7284	99.9156	97.5690	55.8647	2368	2	2368	59	57	96.6102
jpowers-varprowl	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	45.1608	33.2536	70.3518	57.5693	139	279	140	59	58	98.3051
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.8202	97.9852	99.6695	59.8782	17800	366	17792	59	52	88.1356
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.8202	97.9852	99.6695	59.8782	17800	366	17792	59	52	88.1356
jli-custom	SNP	*	map_l250_m1_e0	*	98.1678	97.1891	99.1664	85.6613	7019	203	7019	59	29	49.1525
jmaeng-gatk	INDEL	*	map_l125_m0_e0	het	94.0273	97.6150	90.6940	93.8779	573	14	575	59	2	3.3898
jli-custom	INDEL	D6_15	HG002complexvar	*	98.1282	97.3972	98.8702	56.5015	5164	138	5163	59	53	89.8305
ltrigg-rtg1	INDEL	I1_5	*	homalt	99.7620	99.6227	99.9017	50.6392	60199	228	59978	59	47	79.6610
ltrigg-rtg1	INDEL	I6_15	*	homalt	98.7666	98.4933	99.0414	43.6510	6145	94	6096	59	52	88.1356
ltrigg-rtg1	SNP	*	map_l100_m0_e0	het	98.4261	97.1705	99.7145	55.4883	20605	600	20610	59	8	13.5593
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.4548	98.0660	98.8468	71.0240	5020	99	5057	59	13	22.0339
egarrison-hhga	SNP	*	HG002compoundhet	het	98.5499	97.5455	99.5752	43.4625	13830	348	13830	59	31	52.5424
egarrison-hhga	SNP	*	map_l150_m2_e1	het	99.1207	98.5415	99.7068	75.7393	20066	297	20066	59	22	37.2881
eyeh-varpipe	INDEL	*	map_l150_m2_e1	*	96.5509	96.1084	96.9975	95.6629	1383	56	1906	59	42	71.1864
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.7706	100.0000	97.5710	56.3208	2370	0	2370	59	59	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.9205	98.2346	99.6161	72.9579	15302	275	15309	59	45	76.2712

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