PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
13501-13550 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5421 | 99.6910 | 99.3935 | 43.8031 | 10325 | 32 | 10325 | 63 | 62 | 98.4127 | |
| gduggal-snapplat | INDEL | * | func_cds | * | 70.8193 | 61.5730 | 83.3333 | 53.5627 | 274 | 171 | 315 | 63 | 1 | 1.5873 | |
| ckim-dragen | INDEL | * | HG002complexvar | hetalt | 95.4523 | 92.7548 | 98.3114 | 67.8279 | 3431 | 268 | 3668 | 63 | 63 | 100.0000 | |
| ckim-gatk | INDEL | * | HG002complexvar | hetalt | 91.5474 | 85.7529 | 98.1818 | 66.4439 | 3172 | 527 | 3402 | 63 | 63 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.3615 | 99.8976 | 96.8719 | 41.6063 | 1951 | 2 | 1951 | 63 | 62 | 98.4127 | |
| cchapple-custom | SNP | * | func_cds | * | 99.7855 | 99.9174 | 99.6539 | 26.7611 | 18135 | 15 | 18142 | 63 | 1 | 1.5873 | |
| cchapple-custom | SNP | * | func_cds | het | 99.6697 | 99.9014 | 99.4391 | 30.1424 | 11150 | 11 | 11168 | 63 | 1 | 1.5873 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4328 | 99.7924 | 99.0758 | 46.4998 | 6730 | 14 | 6754 | 63 | 6 | 9.5238 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.8066 | 99.2505 | 98.3666 | 68.3281 | 3840 | 29 | 3794 | 63 | 61 | 96.8254 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.2525 | 95.3621 | 99.2194 | 61.6689 | 8019 | 390 | 8008 | 63 | 59 | 93.6508 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 61.6716 | 83.8235 | 48.7805 | 53.5849 | 57 | 11 | 60 | 63 | 57 | 90.4762 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.2004 | 96.2658 | 96.1350 | 51.4737 | 1521 | 59 | 1567 | 63 | 25 | 39.6825 | |
| anovak-vg | SNP | tv | map_l100_m2_e1 | homalt | 91.3691 | 84.6807 | 99.2047 | 63.3275 | 7877 | 1425 | 7859 | 63 | 46 | 73.0159 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.1198 | 98.2713 | 92.1642 | 62.1469 | 739 | 13 | 741 | 63 | 62 | 98.4127 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002compoundhet | homalt | 8.6957 | 100.0000 | 4.5455 | 78.0731 | 3 | 0 | 3 | 63 | 59 | 93.6508 | |
| asubramanian-gatk | SNP | ti | HG002complexvar | het | 98.4409 | 96.9492 | 99.9794 | 17.3446 | 305163 | 9603 | 305113 | 63 | 21 | 33.3333 | |
| astatham-gatk | SNP | ti | map_l100_m1_e0 | * | 92.0088 | 85.3122 | 99.8461 | 68.2409 | 40891 | 7040 | 40884 | 63 | 36 | 57.1429 | |
| astatham-gatk | SNP | ti | map_l100_m2_e0 | * | 92.0782 | 85.4292 | 99.8496 | 69.7884 | 41827 | 7134 | 41820 | 63 | 36 | 57.1429 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 91.1411 | 91.0204 | 91.2621 | 58.1544 | 669 | 66 | 658 | 63 | 61 | 96.8254 | |
| qzeng-custom | SNP | * | segdup | homalt | 99.2653 | 99.1250 | 99.4061 | 87.8458 | 10649 | 94 | 10544 | 63 | 57 | 90.4762 | |
| qzeng-custom | SNP | tv | map_l100_m2_e1 | homalt | 87.7555 | 78.7143 | 99.1432 | 62.9833 | 7322 | 1980 | 7290 | 63 | 62 | 98.4127 | |
| ndellapenna-hhga | SNP | ti | map_l100_m2_e1 | het | 99.1089 | 98.4335 | 99.7937 | 64.2644 | 30475 | 485 | 30477 | 63 | 24 | 38.0952 | |
| qzeng-custom | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 3.0769 | 55.1724 | 0 | 0 | 2 | 63 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e0 | * | 99.1825 | 98.6258 | 99.7454 | 56.6822 | 24689 | 344 | 24684 | 63 | 5 | 7.9365 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | het | 98.8079 | 98.0299 | 99.5983 | 53.4836 | 15624 | 314 | 15620 | 63 | 2 | 3.1746 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 93.8778 | 96.0437 | 91.8075 | 72.7305 | 704 | 29 | 706 | 63 | 44 | 69.8413 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 48.4670 | 39.4052 | 62.9412 | 75.7489 | 106 | 163 | 107 | 63 | 60 | 95.2381 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 74.3472 | 92.7273 | 62.0482 | 92.1103 | 102 | 8 | 103 | 63 | 45 | 71.4286 | |
| mlin-fermikit | SNP | tv | map_l250_m0_e0 | homalt | 47.1642 | 40.9326 | 55.6338 | 80.3051 | 79 | 114 | 79 | 63 | 60 | 95.2381 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.1711 | 99.1342 | 87.8846 | 63.1467 | 458 | 4 | 457 | 63 | 48 | 76.1905 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 95.3664 | 97.8824 | 92.9766 | 48.8889 | 832 | 18 | 834 | 63 | 21 | 33.3333 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.2899 | 99.2769 | 99.3030 | 49.7051 | 961 | 7 | 8976 | 63 | 26 | 41.2698 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.1858 | 63.3364 | 95.5758 | 44.5914 | 1363 | 789 | 1361 | 63 | 54 | 85.7143 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 49.3151 | 45.8599 | 53.3333 | 66.3342 | 72 | 85 | 72 | 63 | 61 | 96.8254 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 81.2423 | 74.6055 | 89.1753 | 53.3280 | 520 | 177 | 519 | 63 | 62 | 98.4127 | |
| jmaeng-gatk | INDEL | D1_5 | segdup | het | 95.2904 | 99.2775 | 91.6112 | 96.4890 | 687 | 5 | 688 | 63 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.1341 | 96.7259 | 99.5838 | 73.0521 | 15067 | 510 | 15075 | 63 | 45 | 71.4286 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.4747 | 97.3872 | 99.5868 | 71.5695 | 15170 | 407 | 15184 | 63 | 47 | 74.6032 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.4217 | 95.9190 | 98.9723 | 59.1578 | 6064 | 258 | 6067 | 63 | 48 | 76.1905 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.4217 | 95.9190 | 98.9723 | 59.1578 | 6064 | 258 | 6067 | 63 | 48 | 76.1905 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.4336 | 95.2855 | 99.6808 | 39.8879 | 19625 | 971 | 19673 | 63 | 52 | 82.5397 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002complexvar | * | 97.6527 | 96.5862 | 98.7430 | 52.4974 | 5121 | 181 | 4949 | 63 | 48 | 76.1905 | |
| jpowers-varprowl | SNP | tv | func_cds | het | 98.3558 | 99.0591 | 97.6623 | 39.9644 | 2632 | 25 | 2632 | 63 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.5329 | 95.5556 | 97.5304 | 68.9206 | 2537 | 118 | 2488 | 63 | 54 | 85.7143 | |
| ltrigg-rtg1 | SNP | * | map_l150_m1_e0 | * | 98.9007 | 98.0267 | 99.7905 | 66.4727 | 30005 | 604 | 30007 | 63 | 22 | 34.9206 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e1 | het | 98.9548 | 98.3185 | 99.5995 | 57.2767 | 15670 | 268 | 15666 | 63 | 5 | 7.9365 | |
| ltrigg-rtg1 | SNP | tv | * | homalt | 99.9663 | 99.9491 | 99.9836 | 19.8090 | 376929 | 192 | 376963 | 62 | 42 | 67.7419 | |
| ltrigg-rtg2 | INDEL | C1_5 | * | het | 88.0848 | 88.8889 | 87.2951 | 96.3468 | 8 | 1 | 426 | 62 | 2 | 3.2258 | |
| jmaeng-gatk | SNP | tv | map_l250_m2_e1 | * | 69.5004 | 54.3896 | 96.2379 | 96.4989 | 1586 | 1330 | 1586 | 62 | 2 | 3.2258 | |
| jpowers-varprowl | INDEL | D16_PLUS | HG002compoundhet | homalt | 15.7895 | 75.0000 | 8.8235 | 49.2537 | 6 | 2 | 6 | 62 | 58 | 93.5484 | |