PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
13251-13300 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | * | map_l100_m1_e0 | het | 97.5114 | 97.9418 | 97.0848 | 83.6025 | 2189 | 46 | 2198 | 66 | 29 | 43.9394 | |
| dgrover-gatk | INDEL | D16_PLUS | HG002compoundhet | het | 89.2587 | 99.2593 | 81.0888 | 59.0856 | 402 | 3 | 283 | 66 | 63 | 95.4545 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.7286 | 97.2989 | 96.1650 | 69.1079 | 1657 | 46 | 1655 | 66 | 14 | 21.2121 | |
| egarrison-hhga | SNP | * | map_l100_m0_e0 | * | 99.3454 | 98.8977 | 99.7972 | 67.0353 | 32479 | 362 | 32480 | 66 | 33 | 50.0000 | |
| egarrison-hhga | SNP | tv | HG002complexvar | het | 99.7360 | 99.5170 | 99.9560 | 21.2359 | 150003 | 728 | 150023 | 66 | 28 | 42.4242 | |
| ckim-vqsr | INDEL | I16_PLUS | HG002compoundhet | homalt | 8.3333 | 100.0000 | 4.3478 | 72.9412 | 3 | 0 | 3 | 66 | 66 | 100.0000 | |
| ckim-vqsr | SNP | * | map_l250_m2_e1 | * | 59.3854 | 42.5817 | 98.0963 | 97.1254 | 3401 | 4586 | 3401 | 66 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m2_e1 | het | 69.4427 | 53.8564 | 97.7249 | 97.1454 | 2835 | 2429 | 2835 | 66 | 0 | 0.0000 | |
| ckim-isaac | SNP | * | map_l125_m1_e0 | * | 73.2800 | 57.9125 | 99.7492 | 70.8000 | 26250 | 19077 | 26252 | 66 | 16 | 24.2424 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 81.8034 | 73.8226 | 91.7189 | 86.0200 | 674 | 239 | 731 | 66 | 8 | 12.1212 | |
| ckim-isaac | INDEL | D6_15 | HG002complexvar | homalt | 84.4830 | 77.2455 | 93.2169 | 48.7355 | 903 | 266 | 907 | 66 | 15 | 22.7273 | |
| ckim-isaac | INDEL | I6_15 | * | hetalt | 81.9509 | 69.9567 | 98.9089 | 28.8855 | 5982 | 2569 | 5983 | 66 | 52 | 78.7879 | |
| rpoplin-dv42 | SNP | ti | map_l150_m0_e0 | het | 98.4858 | 98.2735 | 98.6990 | 79.8611 | 5009 | 88 | 5007 | 66 | 44 | 66.6667 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 67.6329 | 98.5915 | 51.4706 | 49.8155 | 70 | 1 | 70 | 66 | 66 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6864 | 99.1226 | 98.2540 | 71.3658 | 3728 | 33 | 3714 | 66 | 64 | 96.9697 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.6864 | 99.1226 | 98.2540 | 71.3658 | 3728 | 33 | 3714 | 66 | 64 | 96.9697 | |
| cchapple-custom | INDEL | I6_15 | HG002complexvar | * | 97.5496 | 96.4942 | 98.6284 | 54.8042 | 4624 | 168 | 4746 | 66 | 60 | 90.9091 | |
| ciseli-custom | INDEL | * | func_cds | * | 84.1100 | 83.3708 | 84.8624 | 37.1758 | 371 | 74 | 370 | 66 | 30 | 45.4545 | |
| ckim-gatk | INDEL | I16_PLUS | HG002compoundhet | homalt | 8.3333 | 100.0000 | 4.3478 | 72.9412 | 3 | 0 | 3 | 66 | 66 | 100.0000 | |
| ckim-gatk | SNP | tv | HG002complexvar | het | 99.7094 | 99.4639 | 99.9560 | 22.1876 | 149923 | 808 | 149845 | 66 | 19 | 28.7879 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.0513 | 91.9890 | 94.1385 | 58.2808 | 333 | 29 | 1060 | 66 | 64 | 96.9697 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.8557 | 99.0868 | 90.9713 | 82.4616 | 868 | 8 | 665 | 66 | 62 | 93.9394 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 94.1262 | 98.8156 | 89.8618 | 90.2908 | 584 | 7 | 585 | 66 | 3 | 4.5455 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m1_e0 | * | 94.8406 | 98.4658 | 91.4729 | 91.9576 | 706 | 11 | 708 | 66 | 5 | 7.5758 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 93.5024 | 99.0272 | 88.5615 | 93.0997 | 509 | 5 | 511 | 66 | 4 | 6.0606 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m2_e1 | het | 93.4998 | 98.8506 | 88.6986 | 93.1423 | 516 | 6 | 518 | 66 | 4 | 6.0606 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.6361 | 99.3135 | 86.8000 | 48.5597 | 434 | 3 | 434 | 66 | 66 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | segdup | het | 92.5651 | 94.3642 | 90.8333 | 95.6342 | 653 | 39 | 654 | 66 | 21 | 31.8182 | |
| ciseli-custom | INDEL | D1_5 | segdup | homalt | 89.2779 | 95.5432 | 83.7838 | 94.1865 | 343 | 16 | 341 | 66 | 59 | 89.3939 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 28.5347 | 18.3183 | 64.5161 | 91.0058 | 122 | 544 | 120 | 66 | 37 | 56.0606 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 28.5347 | 18.3183 | 64.5161 | 91.0058 | 122 | 544 | 120 | 66 | 37 | 56.0606 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 33.1579 | 52.9412 | 24.1379 | 86.1022 | 27 | 24 | 21 | 66 | 2 | 3.0303 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 25.2874 | 96.0490 | 0 | 0 | 22 | 65 | 10 | 15.3846 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 32.1213 | 27.4648 | 38.6792 | 40.1130 | 39 | 103 | 41 | 65 | 65 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l125_m1_e0 | het | 95.7558 | 96.3296 | 95.1887 | 89.3639 | 1286 | 49 | 1286 | 65 | 7 | 10.7692 | |
| ckim-dragen | INDEL | D1_5 | map_siren | het | 97.9286 | 98.6825 | 97.1861 | 82.8253 | 2247 | 30 | 2245 | 65 | 4 | 6.1539 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.9169 | 99.3027 | 98.5341 | 69.1612 | 4415 | 31 | 4369 | 65 | 62 | 95.3846 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.2889 | 98.3993 | 98.1788 | 72.3290 | 3504 | 57 | 3504 | 65 | 45 | 69.2308 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m1_e0 | het | 93.1888 | 98.9627 | 88.0515 | 92.7273 | 477 | 5 | 479 | 65 | 4 | 6.1539 | |
| hfeng-pmm3 | SNP | tv | map_l100_m2_e0 | het | 99.5338 | 99.4803 | 99.5875 | 67.0941 | 15695 | 82 | 15691 | 65 | 5 | 7.6923 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 96.8390 | 98.3187 | 95.4031 | 87.7576 | 1345 | 23 | 1349 | 65 | 7 | 10.7692 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e1 | * | 96.8991 | 98.3513 | 95.4892 | 87.8016 | 1372 | 23 | 1376 | 65 | 7 | 10.7692 | |
| hfeng-pmm2 | INDEL | D16_PLUS | HG002compoundhet | * | 95.1177 | 93.2080 | 97.1073 | 33.8339 | 2182 | 159 | 2182 | 65 | 63 | 96.9231 | |
| hfeng-pmm1 | SNP | ti | HG002complexvar | * | 99.8935 | 99.8000 | 99.9872 | 17.3497 | 507419 | 1017 | 507360 | 65 | 31 | 47.6923 | |
| hfeng-pmm1 | SNP | ti | map_l100_m0_e0 | het | 99.2035 | 98.8772 | 99.5320 | 69.1542 | 13826 | 157 | 13823 | 65 | 16 | 24.6154 | |
| hfeng-pmm1 | SNP | ti | map_l150_m1_e0 | het | 99.0951 | 98.7227 | 99.4704 | 74.9167 | 12212 | 158 | 12208 | 65 | 17 | 26.1538 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 59.2949 | 45.8221 | 83.9901 | 84.3906 | 340 | 402 | 341 | 65 | 1 | 1.5385 | |
| gduggal-bwaplat | SNP | ti | map_l150_m1_e0 | het | 74.1845 | 59.2724 | 99.1222 | 91.2737 | 7332 | 5038 | 7340 | 65 | 21 | 32.3077 | |
| gduggal-bwavard | INDEL | I1_5 | segdup | * | 92.2615 | 90.9348 | 93.6275 | 94.8607 | 963 | 96 | 955 | 65 | 56 | 86.1538 | |
| gduggal-bwavard | SNP | * | func_cds | * | 99.3111 | 98.9862 | 99.6380 | 30.1556 | 17966 | 184 | 17892 | 65 | 23 | 35.3846 | |