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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 252 253 254 255 256 257 258 259 260 ... 1720 1721 » 12751-12800 / 86044 show all
asubramanian-gatk	INDEL	I6_15	*	hetalt	94.9273	91.1005	99.0896	39.2643	7790	761	7837	72	68	94.4444
bgallagher-sentieon	INDEL	*	map_l100_m1_e0	*	98.3343	98.6615	98.0094	85.1549	3538	48	3545	72	17	23.6111
astatham-gatk	INDEL	I1_5	HG002compoundhet	het	94.9597	98.5882	91.5888	86.4942	838	12	784	72	70	97.2222
bgallagher-sentieon	SNP	tv	segdup	*	99.4858	99.8125	99.1612	91.3387	8516	16	8512	72	6	8.3333
asubramanian-gatk	INDEL	*	map_l125_m1_e0	het	88.1603	83.0712	93.9138	91.7400	1109	226	1111	72	7	9.7222
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	het	32.5234	37.5000	28.7129	27.3381	9	15	29	72	60	83.3333
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.0379	96.6562	99.4597	63.5583	13297	460	13254	72	47	65.2778
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.0379	96.6562	99.4597	63.5583	13297	460	13254	72	47	65.2778
hfeng-pmm3	INDEL	*	HG002complexvar	het	98.8973	97.9724	99.8399	56.4422	45275	937	44901	72	42	58.3333
hfeng-pmm3	INDEL	*	HG002complexvar	homalt	99.7967	99.8594	99.7340	55.8371	26989	38	26999	72	66	91.6667
hfeng-pmm3	SNP	tv	map_l125_m1_e0	*	99.5034	99.4568	99.5500	69.7161	15929	87	15927	72	10	13.8889
hfeng-pmm3	SNP	tv	map_l125_m2_e0	*	99.5176	99.4724	99.5629	71.4177	16402	87	16400	72	10	13.8889
hfeng-pmm3	SNP	tv	map_l125_m2_e1	*	99.5225	99.4777	99.5673	71.4702	16570	87	16568	72	10	13.8889
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	96.2215	96.1718	96.2714	63.1699	1859	74	1859	72	59	81.9444
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	89.3252	96.0422	83.4862	59.5922	364	15	364	72	72	100.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	98.4716	97.2738	99.6993	39.0402	23871	669	23873	72	65	90.2778
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.8678	98.1204	99.6266	68.0485	19211	368	19212	72	5	6.9444
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.8678	98.1204	99.6266	68.0485	19211	368	19212	72	5	6.9444
hfeng-pmm3	SNP	ti	map_l100_m0_e0	het	99.3735	99.2634	99.4838	69.6444	13880	103	13877	72	7	9.7222
hfeng-pmm3	SNP	ti	map_l150_m1_e0	het	99.3161	99.2158	99.4166	75.5923	12273	97	12269	72	8	11.1111
hfeng-pmm1	SNP	*	HG002complexvar	het	99.8138	99.6436	99.9845	18.0286	463838	1659	463708	72	19	26.3889
hfeng-pmm1	SNP	*	map_l250_m1_e0	*	98.8139	98.6292	98.9993	88.0247	7123	99	7123	72	16	22.2222
hfeng-pmm1	SNP	ti	map_l125_m0_e0	*	99.2424	99.0519	99.4336	73.9101	12641	121	12639	72	20	27.7778
hfeng-pmm1	SNP	ti	map_l125_m1_e0	het	99.2306	98.8613	99.6028	70.2477	18058	208	18054	72	18	25.0000
jpowers-varprowl	INDEL	D6_15	map_l100_m2_e1	*	65.1881	61.0909	69.8745	86.3116	168	107	167	72	69	95.8333
jpowers-varprowl	INDEL	D6_15	map_l100_m2_e1	het	73.3945	88.8889	62.5000	87.0095	120	15	120	72	69	95.8333
jpowers-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	83.4460	89.1304	78.4431	93.1585	246	30	262	72	4	5.5556
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	98.7118	98.0915	99.3400	56.1553	10896	212	10837	72	12	16.6667
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.5965	95.7727	99.4912	45.8166	14160	625	14078	72	63	87.5000
jli-custom	INDEL	D6_15	HG002compoundhet	homalt	40.0000	100.0000	25.0000	72.0117	24	0	24	72	72	100.0000
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.7488	99.7472	97.7702	52.2408	3157	8	3157	72	71	98.6111
jmaeng-gatk	INDEL	I1_5	segdup	het	93.2743	99.0706	88.1188	96.5876	533	5	534	72	0	0.0000
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.4405	99.5463	99.3348	79.5031	10752	49	10752	72	13	18.0556
jli-custom	SNP	ti	map_l125_m0_e0	het	98.6256	98.1363	99.1199	71.4709	8109	154	8109	72	25	34.7222
ckim-isaac	SNP	ti	map_siren	het	88.1134	78.8433	99.8538	52.2793	49184	13198	49191	72	6	8.3333
ckim-isaac	SNP	tv	HG002compoundhet	het	84.5719	74.3206	98.1038	53.1755	3473	1200	3725	72	17	23.6111
ckim-vqsr	INDEL	*	map_l100_m1_e0	het	96.2709	95.7942	96.7524	90.3659	2141	94	2145	72	11	15.2778
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	92.7974	97.3813	88.6256	72.0653	595	16	561	72	68	94.4444
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	73.0758	91.8919	60.6557	74.5480	136	12	111	72	71	98.6111
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	98.6351	98.0293	99.2485	64.1671	9501	191	9509	72	32	44.4444
egarrison-hhga	SNP	ti	map_l100_m2_e1	*	99.5683	99.2846	99.8537	64.5157	49131	354	49132	72	32	44.4444
egarrison-hhga	INDEL	D1_5	*	hetalt	77.5745	63.8360	98.8480	70.3665	6540	3705	6178	72	64	88.8889
egarrison-hhga	INDEL	D6_15	HG002complexvar	homalt	95.9329	97.8614	94.0789	59.2766	1144	25	1144	72	43	59.7222
dgrover-gatk	INDEL	I16_PLUS	HG002compoundhet	*	94.7743	93.0938	96.5167	53.0120	1995	148	1995	72	72	100.0000
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	92.6853	87.1155	99.0159	25.1484	7052	1043	7244	72	68	94.4444
ckim-isaac	INDEL	I16_PLUS	*	homalt	79.0390	68.3536	93.6842	50.1966	1067	494	1068	72	53	73.6111
ckim-isaac	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	91.9653	86.1570	98.6135	44.3408	5116	822	5121	72	60	83.3333
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	72.7050	91.2162	60.4396	74.6165	135	13	110	72	71	98.6111
rpoplin-dv42	SNP	tv	map_l150_m0_e0	*	98.0795	97.8917	98.2680	78.2094	4086	88	4085	72	45	62.5000
raldana-dualsentieon	INDEL	I6_15	*	het	98.4817	97.7076	99.2683	55.4872	9803	230	9768	72	56	77.7778

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