PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12451-12500 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D6_15 | map_l100_m2_e1 | het | 77.2912 | 99.2593 | 63.2850 | 90.3316 | 134 | 1 | 131 | 76 | 63 | 82.8947 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 92.3833 | 95.4225 | 89.5317 | 74.6685 | 813 | 39 | 650 | 76 | 31 | 40.7895 | |
| gduggal-bwafb | INDEL | * | map_siren | het | 96.6142 | 94.9645 | 98.3223 | 79.9104 | 4281 | 227 | 4454 | 76 | 20 | 26.3158 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 69.9678 | 56.0261 | 93.1470 | 80.3055 | 1032 | 810 | 1033 | 76 | 17 | 22.3684 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 71.8766 | 64.7541 | 80.7595 | 87.1336 | 316 | 172 | 319 | 76 | 1 | 1.3158 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.8326 | 79.5328 | 98.0666 | 79.9980 | 3847 | 990 | 3855 | 76 | 43 | 56.5789 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.6527 | 94.4759 | 98.9323 | 48.2177 | 6345 | 371 | 7042 | 76 | 21 | 27.6316 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.9135 | 97.8996 | 97.9275 | 49.2246 | 3589 | 77 | 3591 | 76 | 67 | 88.1579 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.3797 | 99.1386 | 99.6220 | 59.2352 | 20025 | 174 | 20030 | 76 | 54 | 71.0526 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.8486 | 99.6390 | 98.0706 | 65.3592 | 3864 | 14 | 3863 | 76 | 10 | 13.1579 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.2251 | 99.7837 | 94.7945 | 71.8473 | 1384 | 3 | 1384 | 76 | 5 | 6.5790 | |
| eyeh-varpipe | INDEL | D6_15 | map_siren | * | 81.9080 | 78.5855 | 85.5238 | 80.3591 | 400 | 109 | 449 | 76 | 58 | 76.3158 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m1_e0 | * | 96.2856 | 96.1165 | 96.4552 | 81.4147 | 1287 | 52 | 2068 | 76 | 58 | 76.3158 | |
| ckim-dragen | SNP | * | map_l250_m0_e0 | het | 95.1276 | 95.2855 | 94.9702 | 94.2264 | 1435 | 71 | 1435 | 76 | 1 | 1.3158 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 21.6495 | 88.8634 | 0 | 0 | 21 | 76 | 18 | 23.6842 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m1_e0 | het | 72.3508 | 65.5602 | 80.7107 | 93.7629 | 316 | 166 | 318 | 76 | 19 | 25.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 18.2169 | 11.6667 | 41.5385 | 87.5836 | 56 | 424 | 54 | 76 | 61 | 80.2632 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.2384 | 96.8903 | 88.0126 | 71.8972 | 592 | 19 | 558 | 76 | 72 | 94.7368 | |
| cchapple-custom | INDEL | * | map_l150_m2_e0 | het | 94.0611 | 95.9161 | 92.2764 | 90.5184 | 869 | 37 | 908 | 76 | 12 | 15.7895 | |
| cchapple-custom | INDEL | * | map_l150_m2_e1 | het | 94.1271 | 95.8874 | 92.4303 | 90.5506 | 886 | 38 | 928 | 76 | 12 | 15.7895 | |
| cchapple-custom | SNP | * | map_l250_m0_e0 | * | 95.4584 | 94.5667 | 96.3671 | 93.6675 | 2019 | 116 | 2016 | 76 | 21 | 27.6316 | |
| hfeng-pmm2 | SNP | ti | map_l250_m1_e0 | * | 98.7163 | 99.0828 | 98.3525 | 89.4985 | 4537 | 42 | 4537 | 76 | 9 | 11.8421 | |
| hfeng-pmm2 | SNP | ti | map_l250_m2_e0 | * | 98.8259 | 99.1613 | 98.4927 | 89.9448 | 4966 | 42 | 4966 | 76 | 9 | 11.8421 | |
| hfeng-pmm2 | INDEL | D1_5 | * | homalt | 99.8457 | 99.8467 | 99.8447 | 59.0004 | 48851 | 75 | 48855 | 76 | 74 | 97.3684 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.7336 | 97.7570 | 99.7300 | 68.1488 | 28068 | 644 | 28068 | 76 | 5 | 6.5790 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.7336 | 97.7570 | 99.7300 | 68.1488 | 28068 | 644 | 28068 | 76 | 5 | 6.5790 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e0 | * | 98.8758 | 98.7191 | 99.0331 | 88.4730 | 7784 | 101 | 7784 | 76 | 17 | 22.3684 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e1 | * | 98.8775 | 98.7104 | 99.0452 | 88.5497 | 7884 | 103 | 7884 | 76 | 17 | 22.3684 | |
| hfeng-pmm3 | SNP | ti | map_l125_m0_e0 | * | 99.3611 | 99.3183 | 99.4039 | 74.1190 | 12675 | 87 | 12673 | 76 | 11 | 14.4737 | |
| hfeng-pmm3 | SNP | ti | segdup | het | 99.5602 | 99.7506 | 99.3705 | 89.3230 | 12000 | 30 | 11998 | 76 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.8159 | 84.8980 | 77.1084 | 78.5252 | 416 | 74 | 256 | 76 | 74 | 97.3684 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.2206 | 92.5954 | 97.9989 | 55.8475 | 3689 | 295 | 3722 | 76 | 35 | 46.0526 | |
| ltrigg-rtg2 | INDEL | D6_15 | * | het | 99.2141 | 99.0942 | 99.3342 | 52.7094 | 11487 | 105 | 11339 | 76 | 26 | 34.2105 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.3014 | 97.1593 | 99.4708 | 45.1343 | 14365 | 420 | 14284 | 76 | 68 | 89.4737 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.6020 | 89.7937 | 95.5916 | 62.8768 | 1654 | 188 | 1648 | 76 | 46 | 60.5263 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8278 | 98.3293 | 99.3313 | 69.2512 | 11359 | 193 | 11290 | 76 | 45 | 59.2105 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.8278 | 98.3293 | 99.3313 | 69.2512 | 11359 | 193 | 11290 | 76 | 45 | 59.2105 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.3380 | 98.3399 | 94.4159 | 89.8856 | 1244 | 21 | 1285 | 76 | 19 | 25.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m1_e0 | * | 99.2402 | 98.6481 | 99.8395 | 53.2325 | 47283 | 648 | 47285 | 76 | 17 | 22.3684 | |
| mlin-fermikit | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.6638 | 99.3464 | 94.1222 | 70.3644 | 1216 | 8 | 1217 | 76 | 58 | 76.3158 | |
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.2029 | 96.8864 | 99.5557 | 62.5968 | 17021 | 547 | 17030 | 76 | 4 | 5.2632 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 79.1466 | 70.0599 | 90.9416 | 60.7394 | 702 | 300 | 763 | 76 | 70 | 92.1053 | |
| jli-custom | SNP | * | HG002compoundhet | * | 99.7328 | 99.7599 | 99.7058 | 41.1267 | 25760 | 62 | 25757 | 76 | 36 | 47.3684 | |
| jli-custom | INDEL | D1_5 | HG002complexvar | * | 99.5191 | 99.2725 | 99.7668 | 57.5505 | 32477 | 238 | 32518 | 76 | 59 | 77.6316 | |
| jpowers-varprowl | INDEL | * | map_l150_m2_e0 | het | 92.3836 | 93.0464 | 91.7301 | 91.9202 | 843 | 63 | 843 | 76 | 49 | 64.4737 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2906 | 99.5974 | 98.9856 | 37.6602 | 7422 | 30 | 7416 | 76 | 2 | 2.6316 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 72.5190 | 95.4545 | 58.4699 | 92.1862 | 105 | 5 | 107 | 76 | 29 | 38.1579 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.6119 | 99.1025 | 98.1262 | 58.8223 | 3975 | 36 | 3980 | 76 | 19 | 25.0000 | |
| jmaeng-gatk | INDEL | I1_5 | HG002compoundhet | het | 94.2604 | 97.6471 | 91.1007 | 86.7453 | 830 | 20 | 778 | 76 | 74 | 97.3684 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 23.2825 | 16.1074 | 41.9847 | 51.3011 | 24 | 125 | 55 | 76 | 63 | 82.8947 | |