PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12401-12450 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.8184 | 94.7230 | 94.9141 | 71.6532 | 1436 | 80 | 1437 | 77 | 43 | 55.8442 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e1 | * | 98.9981 | 98.1759 | 99.8341 | 61.4299 | 46341 | 861 | 46349 | 77 | 15 | 19.4805 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 2.5316 | 100.0000 | 1.2821 | 72.3404 | 1 | 0 | 1 | 77 | 2 | 2.5974 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e0 | * | 83.8096 | 78.5059 | 89.8817 | 94.3466 | 599 | 164 | 684 | 77 | 18 | 23.3766 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 73.0270 | 60.6987 | 91.6395 | 81.0025 | 834 | 540 | 844 | 77 | 2 | 2.5974 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e1 | * | 84.0458 | 78.8506 | 89.9740 | 94.0271 | 686 | 184 | 691 | 77 | 4 | 5.1948 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m1_e0 | het | 76.3802 | 83.3333 | 70.4981 | 82.9300 | 105 | 21 | 184 | 77 | 53 | 68.8312 | |
| gduggal-snapvard | INDEL | I1_5 | segdup | het | 92.0218 | 96.8401 | 87.6603 | 96.3583 | 521 | 17 | 547 | 77 | 64 | 83.1169 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | * | 67.6145 | 65.4545 | 69.9219 | 89.0552 | 180 | 95 | 179 | 77 | 71 | 92.2078 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | het | 76.7442 | 97.7778 | 63.1579 | 89.8936 | 132 | 3 | 132 | 77 | 71 | 92.2078 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | het | 94.4317 | 98.3269 | 90.8333 | 89.6462 | 764 | 13 | 763 | 77 | 26 | 33.7662 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.7243 | 96.3506 | 97.1009 | 69.6907 | 2561 | 97 | 2579 | 77 | 32 | 41.5584 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.1064 | 98.8722 | 93.4911 | 83.7545 | 1315 | 15 | 1106 | 77 | 66 | 85.7143 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.7565 | 97.0533 | 96.4614 | 41.7715 | 2075 | 63 | 2099 | 77 | 36 | 46.7532 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5288 | 99.4462 | 99.6115 | 59.5139 | 19752 | 110 | 19745 | 77 | 49 | 63.6364 | |
| asubramanian-gatk | INDEL | D1_5 | HG002compoundhet | hetalt | 96.4959 | 93.9311 | 99.2046 | 59.5968 | 9596 | 620 | 9604 | 77 | 71 | 92.2078 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 11.7218 | 6.7568 | 44.2029 | 61.9835 | 45 | 621 | 61 | 77 | 10 | 12.9870 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 11.7218 | 6.7568 | 44.2029 | 61.9835 | 45 | 621 | 61 | 77 | 10 | 12.9870 | |
| asubramanian-gatk | INDEL | * | map_l125_m2_e0 | * | 91.1937 | 86.7486 | 96.1190 | 97.1265 | 1905 | 291 | 1907 | 77 | 8 | 10.3896 | |
| asubramanian-gatk | INDEL | * | map_l125_m2_e1 | * | 91.1601 | 86.6517 | 96.1634 | 97.1389 | 1928 | 297 | 1930 | 77 | 8 | 10.3896 | |
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 87.8165 | 0 | 0 | 0 | 77 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 87.8165 | 0 | 0 | 0 | 77 | 0 | 0.0000 | ||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 89.1082 | 85.6054 | 92.9098 | 41.8941 | 1011 | 170 | 1009 | 77 | 77 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | HG002compoundhet | hetalt | 95.2514 | 91.2113 | 99.6659 | 56.7239 | 22967 | 2213 | 22971 | 77 | 76 | 98.7013 | |
| ltrigg-rtg1 | SNP | * | map_l100_m0_e0 | * | 98.8943 | 98.0421 | 99.7614 | 58.2016 | 32198 | 643 | 32201 | 77 | 23 | 29.8701 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.3775 | 98.4684 | 96.3105 | 71.9263 | 1993 | 31 | 2010 | 77 | 2 | 2.5974 | |
| jli-custom | SNP | ti | map_l125_m0_e0 | * | 98.9692 | 98.5504 | 99.3915 | 69.4510 | 12577 | 185 | 12577 | 77 | 30 | 38.9610 | |
| ckim-vqsr | INDEL | D6_15 | HG002complexvar | * | 98.0282 | 97.5292 | 98.5322 | 58.5722 | 5171 | 131 | 5169 | 77 | 70 | 90.9091 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.7402 | 99.5017 | 88.6095 | 52.7933 | 599 | 3 | 599 | 77 | 76 | 98.7013 | |
| ckim-isaac | SNP | * | map_l100_m1_e0 | het | 81.5197 | 68.9213 | 99.7544 | 66.2256 | 31262 | 14097 | 31269 | 77 | 12 | 15.5844 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 56.2300 | 84.6154 | 42.1053 | 63.3609 | 143 | 26 | 56 | 77 | 75 | 97.4026 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 78.2202 | 78.4416 | 78.0000 | 61.1973 | 302 | 83 | 273 | 77 | 55 | 71.4286 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 92.8637 | 87.9925 | 98.3058 | 30.4621 | 4199 | 573 | 4468 | 77 | 70 | 90.9091 | |
| dgrover-gatk | INDEL | D1_5 | HG002complexvar | * | 99.6498 | 99.5323 | 99.7675 | 58.6672 | 32562 | 153 | 32617 | 76 | 66 | 86.8421 | |
| dgrover-gatk | INDEL | D6_15 | HG002complexvar | * | 98.2978 | 98.0385 | 98.5584 | 58.5437 | 5198 | 104 | 5196 | 76 | 69 | 90.7895 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 17.3913 | 86.6667 | 0 | 0 | 16 | 76 | 11 | 14.4737 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 30.2752 | 80.5357 | 0 | 0 | 33 | 76 | 13 | 17.1053 | |
| ghariani-varprowl | INDEL | * | map_siren | homalt | 94.2088 | 91.6008 | 96.9697 | 74.6820 | 2432 | 223 | 2432 | 76 | 25 | 32.8947 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 53.8527 | 45.9807 | 64.9770 | 74.1667 | 143 | 168 | 141 | 76 | 67 | 88.1579 | |
| hfeng-pmm1 | INDEL | * | HG002complexvar | homalt | 99.7782 | 99.8372 | 99.7192 | 55.9241 | 26983 | 44 | 26991 | 76 | 70 | 92.1053 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e0 | * | 84.1285 | 78.9965 | 89.9736 | 93.9438 | 677 | 180 | 682 | 76 | 4 | 5.2632 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.2001 | 97.4711 | 98.9400 | 41.0943 | 7169 | 186 | 7094 | 76 | 20 | 26.3158 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.8110 | 97.2305 | 94.4322 | 69.1595 | 1299 | 37 | 1289 | 76 | 8 | 10.5263 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.2250 | 97.0760 | 91.5367 | 74.6113 | 830 | 25 | 822 | 76 | 8 | 10.5263 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.2066 | 99.0882 | 99.3253 | 55.9755 | 11193 | 103 | 11189 | 76 | 58 | 76.3158 | |
| gduggal-snapfb | INDEL | * | map_l100_m0_e0 | het | 92.0855 | 91.5769 | 92.5998 | 82.0643 | 935 | 86 | 951 | 76 | 13 | 17.1053 | |
| gduggal-bwavard | INDEL | D1_5 | segdup | * | 92.2805 | 91.6591 | 92.9104 | 95.4235 | 1011 | 92 | 996 | 76 | 57 | 75.0000 | |
| gduggal-bwavard | INDEL | D1_5 | segdup | het | 93.9882 | 98.5549 | 89.8260 | 96.1006 | 682 | 10 | 671 | 76 | 57 | 75.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 90.8783 | 90.7300 | 91.0272 | 61.1646 | 783 | 80 | 771 | 76 | 71 | 93.4211 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m2_e1 | * | 67.9623 | 66.1818 | 69.8413 | 89.4073 | 182 | 93 | 176 | 76 | 63 | 82.8947 | |