PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12351-12400 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.8687 | 99.7876 | 97.9666 | 56.5178 | 3758 | 8 | 3758 | 78 | 76 | 97.4359 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 31.9534 | 86.6667 | 19.5876 | 89.3054 | 13 | 2 | 19 | 78 | 3 | 3.8462 | |
| ciseli-custom | SNP | ti | map_l250_m0_e0 | homalt | 80.1652 | 78.8991 | 81.4727 | 91.7012 | 344 | 92 | 343 | 78 | 53 | 67.9487 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.3522 | 99.0237 | 90.1015 | 65.0864 | 710 | 7 | 710 | 78 | 76 | 97.4359 | |
| cchapple-custom | SNP | ti | HG002compoundhet | * | 99.2669 | 98.9816 | 99.5539 | 35.4095 | 17300 | 178 | 17406 | 78 | 64 | 82.0513 | |
| ciseli-custom | INDEL | C1_5 | * | het | 47.4725 | 44.4444 | 50.9434 | 97.6237 | 4 | 5 | 81 | 78 | 5 | 6.4103 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m0_e0 | het | 62.2449 | 63.5417 | 61.0000 | 91.6771 | 122 | 70 | 122 | 78 | 63 | 80.7692 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 38.8235 | 55.9322 | 29.7297 | 69.0808 | 33 | 26 | 33 | 78 | 73 | 93.5897 | |
| cchapple-custom | INDEL | * | map_l150_m1_e0 | * | 95.3104 | 96.2631 | 94.3764 | 89.0069 | 1288 | 50 | 1309 | 78 | 15 | 19.2308 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.1031 | 98.9474 | 93.4177 | 83.9735 | 1316 | 14 | 1107 | 78 | 65 | 83.3333 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.6669 | 99.5017 | 88.4786 | 52.7565 | 599 | 3 | 599 | 78 | 77 | 98.7179 | |
| ckim-gatk | SNP | tv | HG002complexvar | * | 99.5164 | 99.0689 | 99.9680 | 22.5419 | 243860 | 2292 | 243768 | 78 | 28 | 35.8974 | |
| ckim-gatk | SNP | tv | map_l150_m0_e0 | * | 71.0339 | 56.1092 | 96.7755 | 93.2891 | 2342 | 1832 | 2341 | 78 | 7 | 8.9744 | |
| ckim-gatk | SNP | tv | map_l150_m0_e0 | het | 74.0126 | 60.3588 | 95.6497 | 94.2325 | 1716 | 1127 | 1715 | 78 | 7 | 8.9744 | |
| ciseli-custom | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 88.2263 | 0 | 0 | 0 | 77 | 28 | 36.3636 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.2722 | 96.5106 | 96.0350 | 77.8916 | 2102 | 76 | 1865 | 77 | 72 | 93.5065 | |
| cchapple-custom | INDEL | I6_15 | HG002compoundhet | het | 96.1554 | 93.2692 | 99.2258 | 33.4003 | 194 | 14 | 9869 | 77 | 72 | 93.5065 | |
| ckim-dragen | SNP | tv | map_l250_m2_e0 | het | 96.2715 | 96.4948 | 96.0493 | 91.3378 | 1872 | 68 | 1872 | 77 | 5 | 6.4935 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m2_e0 | * | 96.1316 | 98.7752 | 93.6258 | 90.6812 | 1129 | 14 | 1131 | 77 | 6 | 7.7922 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m2_e1 | * | 96.1771 | 98.7900 | 93.6989 | 90.7298 | 1143 | 14 | 1145 | 77 | 6 | 7.7922 | |
| ckim-gatk | INDEL | D6_15 | HG002complexvar | * | 98.1151 | 97.6990 | 98.5347 | 58.5306 | 5180 | 122 | 5178 | 77 | 70 | 90.9091 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.9679 | 72.4534 | 86.7698 | 52.5285 | 505 | 192 | 505 | 77 | 76 | 98.7013 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.9574 | 97.3744 | 96.5440 | 64.7133 | 2151 | 58 | 2151 | 77 | 74 | 96.1039 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.2432 | 98.7413 | 99.7502 | 68.4984 | 30751 | 392 | 30752 | 77 | 8 | 10.3896 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.2432 | 98.7413 | 99.7502 | 68.4984 | 30751 | 392 | 30752 | 77 | 8 | 10.3896 | |
| hfeng-pmm3 | SNP | tv | map_l100_m1_e0 | * | 99.6386 | 99.5919 | 99.6854 | 64.5700 | 24401 | 100 | 24397 | 77 | 10 | 12.9870 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.4946 | 98.2087 | 98.7822 | 76.6731 | 6305 | 115 | 6246 | 77 | 38 | 49.3506 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.5863 | 99.2023 | 97.9779 | 71.0352 | 3731 | 30 | 3731 | 77 | 75 | 97.4026 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.4946 | 98.2087 | 98.7822 | 76.6731 | 6305 | 115 | 6246 | 77 | 38 | 49.3506 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.5863 | 99.2023 | 97.9779 | 71.0352 | 3731 | 30 | 3731 | 77 | 75 | 97.4026 | |
| jlack-gatk | INDEL | I6_15 | HG002complexvar | * | 97.6141 | 96.8698 | 98.3700 | 57.6968 | 4642 | 150 | 4647 | 77 | 75 | 97.4026 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.9317 | 95.4084 | 98.5046 | 64.3470 | 5070 | 244 | 5072 | 77 | 69 | 89.6104 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.3376 | 93.0985 | 97.6870 | 52.9536 | 3251 | 241 | 3252 | 77 | 70 | 90.9091 | |
| hfeng-pmm1 | SNP | * | segdup | het | 99.6248 | 99.6939 | 99.5558 | 89.5848 | 17264 | 53 | 17258 | 77 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.7289 | 88.8607 | 96.9493 | 47.5369 | 2449 | 307 | 2447 | 77 | 75 | 97.4026 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 49.2114 | 63.1579 | 40.3101 | 83.2031 | 60 | 35 | 52 | 77 | 41 | 53.2468 | |
| gduggal-bwafb | SNP | ti | map_l250_m1_e0 | het | 97.3192 | 97.2372 | 97.4013 | 90.0480 | 2886 | 82 | 2886 | 77 | 22 | 28.5714 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 78.1128 | 65.0730 | 97.6884 | 78.4680 | 3253 | 1746 | 3254 | 77 | 59 | 76.6234 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 78.1128 | 65.0730 | 97.6884 | 78.4680 | 3253 | 1746 | 3254 | 77 | 59 | 76.6234 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 92.4658 | 89.4891 | 95.6473 | 67.6067 | 1524 | 179 | 1692 | 77 | 41 | 53.2468 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 80.9161 | 72.4451 | 91.6304 | 55.0342 | 957 | 364 | 843 | 77 | 76 | 98.7013 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m1_e0 | * | 93.9837 | 93.8013 | 94.1667 | 85.5706 | 1256 | 83 | 1243 | 77 | 36 | 46.7532 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.0740 | 97.6929 | 94.5078 | 73.4922 | 1355 | 32 | 1325 | 77 | 11 | 14.2857 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 77.5741 | 66.9623 | 92.1827 | 77.2517 | 906 | 447 | 908 | 77 | 24 | 31.1688 | |
| ndellapenna-hhga | INDEL | I6_15 | * | hetalt | 95.2209 | 91.6969 | 99.0267 | 38.6839 | 7841 | 710 | 7834 | 77 | 70 | 90.9091 | |
| ndellapenna-hhga | SNP | * | map_l150_m1_e0 | * | 99.0061 | 98.2783 | 99.7447 | 72.1099 | 30082 | 527 | 30082 | 77 | 40 | 51.9481 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 87.8953 | 92.2197 | 83.9583 | 47.5410 | 403 | 34 | 403 | 77 | 45 | 58.4416 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 82.4185 | 78.1955 | 87.1237 | 60.0801 | 104 | 29 | 521 | 77 | 54 | 70.1299 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m1_e0 | * | 72.4899 | 60.1195 | 91.2698 | 75.8091 | 805 | 534 | 805 | 77 | 67 | 87.0130 | |
| mlin-fermikit | SNP | ti | map_l250_m0_e0 | homalt | 50.6550 | 39.9083 | 69.3227 | 79.0659 | 174 | 262 | 174 | 77 | 71 | 92.2078 | |