PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1101-1150 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | ti | HG002complexvar | * | 99.5322 | 99.7412 | 99.3241 | 19.7678 | 507113 | 1316 | 507283 | 3452 | 789 | 22.8563 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 75.2916 | 86.8093 | 66.4721 | 57.3739 | 6410 | 974 | 6834 | 3447 | 1755 | 50.9138 | |
| anovak-vg | SNP | tv | map_l150_m1_e0 | * | 79.0094 | 85.9421 | 73.1117 | 78.8881 | 9378 | 1534 | 9370 | 3446 | 807 | 23.4185 | |
| gduggal-bwaplat | SNP | * | HG002compoundhet | het | 83.0864 | 88.0801 | 78.6286 | 53.0695 | 12488 | 1690 | 12671 | 3444 | 265 | 7.6945 | |
| gduggal-snapvard | SNP | ti | map_siren | het | 95.3627 | 96.2088 | 94.5314 | 68.3335 | 60017 | 2365 | 59499 | 3442 | 355 | 10.3138 | |
| mlin-fermikit | SNP | ti | HG002complexvar | * | 98.2652 | 97.2431 | 99.3090 | 16.9696 | 494420 | 14017 | 494405 | 3440 | 3276 | 95.2326 | |
| eyeh-varpipe | INDEL | I6_15 | * | * | 71.2994 | 63.0343 | 82.0590 | 39.8519 | 15647 | 9176 | 15734 | 3440 | 3408 | 99.0698 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 77.4124 | 95.3132 | 65.1724 | 81.3112 | 6345 | 312 | 6426 | 3434 | 185 | 5.3873 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 89.8755 | 85.9451 | 94.1826 | 54.7512 | 56166 | 9185 | 55450 | 3425 | 2525 | 73.7226 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 89.8755 | 85.9451 | 94.1826 | 54.7512 | 56166 | 9185 | 55450 | 3425 | 2525 | 73.7226 | |
| anovak-vg | SNP | ti | map_l125_m0_e0 | * | 79.1475 | 83.1766 | 75.4908 | 80.4095 | 10615 | 2147 | 10537 | 3421 | 933 | 27.2727 | |
| anovak-vg | SNP | tv | map_l150_m1_e0 | het | 75.5604 | 90.6277 | 64.7889 | 80.5286 | 6295 | 651 | 6291 | 3419 | 787 | 23.0184 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 17.3977 | 88.6010 | 9.6459 | 80.7136 | 342 | 44 | 365 | 3419 | 49 | 1.4332 | |
| ndellapenna-hhga | INDEL | D1_5 | * | het | 97.6637 | 99.1299 | 96.2402 | 54.0039 | 86812 | 762 | 87337 | 3412 | 3186 | 93.3763 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 82.5425 | 81.8606 | 83.2358 | 38.5631 | 16860 | 3736 | 16926 | 3409 | 3210 | 94.1625 | |
| anovak-vg | SNP | * | map_l150_m0_e0 | * | 77.8146 | 81.9066 | 74.1121 | 85.6738 | 9855 | 2177 | 9745 | 3404 | 959 | 28.1727 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 53.4223 | 89.0717 | 38.1524 | 44.9605 | 2111 | 259 | 2098 | 3401 | 3202 | 94.1488 | |
| gduggal-snapfb | INDEL | * | HG002complexvar | het | 90.2528 | 87.9122 | 92.7215 | 54.1807 | 40626 | 5586 | 43300 | 3399 | 1261 | 37.0991 | |
| anovak-vg | SNP | ti | map_l125_m0_e0 | het | 76.2921 | 87.1596 | 67.8342 | 82.4188 | 7202 | 1061 | 7166 | 3398 | 912 | 26.8393 | |
| egarrison-hhga | INDEL | D1_5 | HG002compoundhet | het | 51.9684 | 88.9468 | 36.7077 | 50.8341 | 1537 | 191 | 1969 | 3395 | 3320 | 97.7909 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 62.0279 | 93.0174 | 46.5270 | 38.0827 | 2944 | 221 | 2954 | 3395 | 3317 | 97.7025 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 67.0250 | 86.3068 | 54.7854 | 60.5199 | 3246 | 515 | 4110 | 3392 | 3132 | 92.3349 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 67.0250 | 86.3068 | 54.7854 | 60.5199 | 3246 | 515 | 4110 | 3392 | 3132 | 92.3349 | |
| ciseli-custom | SNP | * | map_l150_m2_e1 | het | 73.3676 | 67.5883 | 80.2276 | 84.7439 | 13763 | 6600 | 13747 | 3388 | 114 | 3.3648 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 41.4960 | 66.6208 | 30.1322 | 55.6999 | 1451 | 727 | 1459 | 3383 | 3363 | 99.4088 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 90.9171 | 92.2101 | 89.6598 | 73.7675 | 28717 | 2426 | 29308 | 3380 | 1164 | 34.4379 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 90.9171 | 92.2101 | 89.6598 | 73.7675 | 28717 | 2426 | 29308 | 3380 | 1164 | 34.4379 | |
| anovak-vg | SNP | * | map_l150_m0_e0 | het | 75.3571 | 86.4106 | 66.8109 | 87.0439 | 6861 | 1079 | 6796 | 3376 | 934 | 27.6659 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 45.6100 | 45.3313 | 45.8922 | 57.7778 | 1806 | 2178 | 2860 | 3372 | 2355 | 69.8399 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 87.2098 | 85.2583 | 89.2527 | 52.9223 | 16934 | 2928 | 27995 | 3371 | 3181 | 94.3637 | |
| gduggal-bwafb | INDEL | * | HG002compoundhet | * | 86.4141 | 81.5955 | 91.8376 | 53.1940 | 24446 | 5514 | 37872 | 3366 | 3207 | 95.2763 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 73.6686 | 98.2908 | 58.9111 | 74.8889 | 4773 | 83 | 4826 | 3366 | 126 | 3.7433 | |
| eyeh-varpipe | INDEL | I1_5 | * | homalt | 96.1261 | 97.6964 | 94.6055 | 51.8219 | 59036 | 1392 | 58978 | 3363 | 3305 | 98.2753 | |
| mlin-fermikit | SNP | ti | HG002complexvar | homalt | 98.3813 | 98.4958 | 98.2669 | 18.8239 | 190554 | 2910 | 190572 | 3361 | 3261 | 97.0247 | |
| gduggal-bwavard | SNP | * | map_l100_m2_e1 | * | 96.4757 | 97.4377 | 95.5326 | 75.4346 | 72822 | 1915 | 71809 | 3358 | 246 | 7.3258 | |
| ciseli-custom | SNP | * | map_l150_m2_e0 | het | 73.2869 | 67.4862 | 80.1784 | 84.7273 | 13587 | 6546 | 13571 | 3355 | 112 | 3.3383 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 61.6432 | 97.7532 | 45.0148 | 36.4990 | 2741 | 63 | 2745 | 3353 | 3280 | 97.8228 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 55.6896 | 75.0355 | 44.2746 | 57.4199 | 1058 | 352 | 2664 | 3353 | 2340 | 69.7882 | |
| mlin-fermikit | INDEL | D1_5 | * | * | 96.7247 | 95.7954 | 97.6723 | 56.1904 | 140575 | 6170 | 140399 | 3346 | 3212 | 95.9952 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 88.1349 | 97.1942 | 80.6205 | 57.4187 | 13371 | 386 | 13903 | 3342 | 3177 | 95.0628 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 88.1349 | 97.1942 | 80.6205 | 57.4187 | 13371 | 386 | 13903 | 3342 | 3177 | 95.0628 | |
| gduggal-bwavard | SNP | * | map_l100_m2_e0 | * | 96.4651 | 97.4352 | 95.5142 | 75.4124 | 72067 | 1897 | 71074 | 3338 | 242 | 7.2499 | |
| mlin-fermikit | SNP | * | map_l125_m2_e1 | * | 63.8417 | 50.2034 | 87.6540 | 61.8934 | 23697 | 23505 | 23692 | 3337 | 2934 | 87.9233 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.5069 | 96.4277 | 92.6612 | 46.2676 | 15197 | 563 | 42020 | 3328 | 2198 | 66.0457 | |
| anovak-vg | SNP | * | HG002compoundhet | het | 78.0560 | 77.3875 | 78.7362 | 46.6128 | 10972 | 3206 | 12323 | 3328 | 2553 | 76.7127 | |
| gduggal-bwavard | SNP | * | map_l100_m2_e1 | het | 95.3077 | 97.5777 | 93.1409 | 79.2994 | 45762 | 1136 | 45178 | 3327 | 221 | 6.6426 | |
| gduggal-bwavard | SNP | * | map_l100_m1_e0 | * | 96.4277 | 97.4269 | 95.4487 | 73.9277 | 70540 | 1863 | 69564 | 3317 | 236 | 7.1149 | |
| gduggal-bwavard | SNP | * | map_l100_m2_e0 | het | 95.2824 | 97.5581 | 93.1104 | 79.2787 | 45266 | 1133 | 44693 | 3307 | 217 | 6.5618 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 39.2362 | 37.2842 | 41.4038 | 61.8887 | 2268 | 3815 | 2336 | 3306 | 2550 | 77.1325 | |
| mlin-fermikit | SNP | * | map_l125_m2_e0 | * | 63.6201 | 49.9497 | 87.5929 | 61.7303 | 23338 | 23385 | 23333 | 3305 | 2908 | 87.9879 | |