PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11101-11150 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D6_15 | map_siren | * | 73.9453 | 70.3340 | 77.9476 | 83.7819 | 358 | 151 | 357 | 101 | 93 | 92.0792 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.4660 | 96.4965 | 98.4552 | 52.4855 | 6445 | 234 | 6437 | 101 | 99 | 98.0198 | |
| rpoplin-dv42 | SNP | * | map_l250_m1_e0 | * | 98.2210 | 97.8538 | 98.5910 | 87.3689 | 7067 | 155 | 7067 | 101 | 66 | 65.3465 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9397 | 98.7667 | 99.1133 | 38.6843 | 11292 | 141 | 11289 | 101 | 1 | 0.9901 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e0 | * | 98.2170 | 98.4425 | 97.9924 | 88.3517 | 4930 | 78 | 4930 | 101 | 3 | 2.9703 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 91.4289 | 93.6983 | 89.2667 | 80.9128 | 907 | 61 | 840 | 101 | 75 | 74.2574 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 1.9417 | 100.0000 | 0.9804 | 62.5000 | 1 | 0 | 1 | 101 | 2 | 1.9802 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 1.9417 | 100.0000 | 0.9804 | 62.5000 | 1 | 0 | 1 | 101 | 2 | 1.9802 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 48.9268 | 34.4420 | 84.4376 | 85.3796 | 466 | 887 | 548 | 101 | 12 | 11.8812 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 12.8457 | 8.1136 | 30.8219 | 63.7717 | 40 | 453 | 45 | 101 | 70 | 69.3069 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 19.4706 | 14.4444 | 29.8611 | 63.4518 | 39 | 231 | 43 | 101 | 70 | 69.3069 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e1 | * | 85.6170 | 80.5532 | 91.3601 | 93.0292 | 932 | 225 | 1068 | 101 | 21 | 20.7921 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 59.2422 | 42.8650 | 95.8708 | 51.4971 | 2331 | 3107 | 2345 | 101 | 90 | 89.1089 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 62.7608 | 46.6890 | 95.7058 | 37.3301 | 2228 | 2544 | 2251 | 101 | 89 | 88.1188 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | * | 85.6819 | 80.6649 | 91.3644 | 92.9665 | 922 | 221 | 1058 | 100 | 21 | 21.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 33.4604 | 24.1319 | 54.5455 | 71.7587 | 139 | 437 | 120 | 100 | 1 | 1.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 36.6202 | 25.3766 | 65.7534 | 73.0876 | 219 | 644 | 192 | 100 | 2 | 2.0000 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e0 | homalt | 99.3166 | 99.0008 | 99.6343 | 64.4739 | 27248 | 275 | 27248 | 100 | 67 | 67.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 35.8293 | 22.1968 | 92.8622 | 57.9026 | 1261 | 4420 | 1301 | 100 | 93 | 93.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 80.4688 | 100.0000 | 67.3203 | 93.0926 | 1 | 0 | 206 | 100 | 19 | 19.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | HG002complexvar | * | 9.5470 | 5.2952 | 48.4536 | 72.9428 | 87 | 1556 | 94 | 100 | 53 | 53.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | HG002complexvar | het | 12.2286 | 7.0461 | 46.2366 | 72.6872 | 78 | 1029 | 86 | 100 | 53 | 53.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 3.8462 | 100.0000 | 1.9608 | 75.9434 | 2 | 0 | 2 | 100 | 3 | 3.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 3.8462 | 100.0000 | 1.9608 | 75.9434 | 2 | 0 | 2 | 100 | 3 | 3.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 79.8362 | 74.7126 | 85.7143 | 54.9550 | 845 | 286 | 600 | 100 | 84 | 84.0000 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e0 | het | 79.4528 | 97.1429 | 67.2131 | 96.8634 | 204 | 6 | 205 | 100 | 13 | 13.0000 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | het | 79.5322 | 97.1564 | 67.3203 | 96.9369 | 205 | 6 | 206 | 100 | 13 | 13.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 79.4159 | 66.8404 | 97.8199 | 66.1276 | 4489 | 2227 | 4487 | 100 | 23 | 23.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | * | * | 72.4372 | 57.6760 | 97.3531 | 65.4535 | 3678 | 2699 | 3678 | 100 | 83 | 83.0000 | |
| gduggal-bwaplat | SNP | * | map_l150_m2_e1 | * | 69.5020 | 53.4244 | 99.4224 | 91.0196 | 17208 | 15002 | 17212 | 100 | 30 | 30.0000 | |
| gduggal-snapfb | INDEL | * | map_l125_m1_e0 | * | 94.2593 | 93.3555 | 95.1807 | 86.4184 | 1967 | 140 | 1975 | 100 | 24 | 24.0000 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e0 | * | 94.4209 | 93.4882 | 95.3725 | 87.3515 | 2053 | 143 | 2061 | 100 | 24 | 24.0000 | |
| qzeng-custom | SNP | * | map_l125_m2_e1 | homalt | 83.7240 | 72.4219 | 99.2062 | 67.7495 | 12697 | 4835 | 12498 | 100 | 99 | 99.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 80.9241 | 70.7711 | 94.4782 | 66.0416 | 1707 | 705 | 1711 | 100 | 97 | 97.0000 | |
| qzeng-custom | INDEL | I1_5 | map_siren | * | 88.5587 | 81.9301 | 96.3544 | 82.1964 | 2462 | 543 | 2643 | 100 | 24 | 24.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.1566 | 89.4121 | 97.2284 | 51.4923 | 3513 | 416 | 3508 | 100 | 94 | 94.0000 | |
| hfeng-pmm3 | SNP | * | segdup | het | 99.5790 | 99.7344 | 99.4241 | 89.8527 | 17271 | 46 | 17265 | 100 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | map_l125_m2_e1 | * | 99.5907 | 99.5093 | 99.6723 | 71.0190 | 30419 | 150 | 30415 | 100 | 16 | 16.0000 | |
| jlack-gatk | SNP | tv | func_cds | * | 98.8573 | 99.9771 | 97.7624 | 38.5704 | 4370 | 1 | 4369 | 100 | 0 | 0.0000 | |
| jlack-gatk | SNP | tv | func_cds | het | 98.1334 | 99.9624 | 96.3702 | 44.4444 | 2656 | 1 | 2655 | 100 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.1000 | 98.3080 | 92.0949 | 58.3471 | 1162 | 20 | 1165 | 100 | 99 | 99.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.2099 | 97.0828 | 99.3634 | 67.3172 | 15608 | 469 | 15609 | 100 | 84 | 84.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.2099 | 97.0828 | 99.3634 | 67.3172 | 15608 | 469 | 15609 | 100 | 84 | 84.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.9858 | 99.4610 | 98.5152 | 56.4669 | 6643 | 36 | 6635 | 100 | 98 | 98.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.7502 | 96.6355 | 96.8652 | 63.0530 | 3102 | 108 | 3090 | 100 | 94 | 94.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.1994 | 99.4197 | 97.0087 | 68.4176 | 3255 | 19 | 3243 | 100 | 97 | 97.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.3948 | 97.3583 | 97.4313 | 62.8424 | 3796 | 103 | 3793 | 100 | 40 | 40.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 93.6530 | 90.3259 | 97.2345 | 54.0242 | 3520 | 377 | 3516 | 100 | 81 | 81.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 83.4617 | 73.6541 | 96.2825 | 47.7670 | 2572 | 920 | 2590 | 100 | 75 | 75.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.6375 | 87.4780 | 98.4438 | 32.3935 | 5959 | 853 | 6326 | 100 | 89 | 89.0000 | |