PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11051-11100 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | D1_5 | map_siren | * | 98.0661 | 98.9799 | 97.1690 | 84.7576 | 3493 | 36 | 3501 | 102 | 10 | 9.8039 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7867 | 98.9531 | 98.6209 | 43.1645 | 7278 | 77 | 7294 | 102 | 43 | 42.1569 | |
| jpowers-varprowl | SNP | tv | map_l250_m0_e0 | * | 90.6683 | 93.9869 | 87.5761 | 95.2078 | 719 | 46 | 719 | 102 | 12 | 11.7647 | |
| jpowers-varprowl | INDEL | * | map_l100_m0_e0 | * | 92.1981 | 91.1068 | 93.3159 | 87.0820 | 1424 | 139 | 1424 | 102 | 64 | 62.7451 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.6957 | 98.3216 | 99.0726 | 47.6211 | 10896 | 186 | 10896 | 102 | 98 | 96.0784 | |
| ltrigg-rtg1 | SNP | * | func_cds | * | 99.6647 | 99.8898 | 99.4405 | 22.8252 | 18130 | 20 | 18129 | 102 | 1 | 0.9804 | |
| ltrigg-rtg1 | SNP | * | func_cds | het | 99.4644 | 99.8387 | 99.0928 | 23.2229 | 11143 | 18 | 11142 | 102 | 1 | 0.9804 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002compoundhet | * | 95.5863 | 92.3089 | 99.1049 | 60.5859 | 11294 | 941 | 11293 | 102 | 95 | 93.1373 | |
| hfeng-pmm1 | SNP | * | map_l100_m0_e0 | het | 99.2124 | 98.9106 | 99.5159 | 69.6159 | 20974 | 231 | 20970 | 102 | 27 | 26.4706 | |
| hfeng-pmm1 | SNP | ti | map_l100_m1_e0 | * | 99.5693 | 99.3532 | 99.7862 | 62.2569 | 47621 | 310 | 47614 | 102 | 32 | 31.3725 | |
| hfeng-pmm1 | INDEL | D16_PLUS | * | het | 97.0973 | 97.6575 | 96.5435 | 74.8637 | 3085 | 74 | 2849 | 102 | 61 | 59.8039 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.7194 | 96.0089 | 99.4918 | 41.3653 | 19774 | 822 | 19775 | 101 | 87 | 86.1386 | |
| jlack-gatk | SNP | ti | * | homalt | 99.9698 | 99.9522 | 99.9874 | 15.9699 | 802654 | 384 | 802644 | 101 | 66 | 65.3465 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.4474 | 99.8648 | 99.0334 | 44.0841 | 10343 | 14 | 10348 | 101 | 98 | 97.0297 | |
| hfeng-pmm2 | SNP | * | HG002complexvar | het | 99.8103 | 99.6430 | 99.9782 | 18.0375 | 463835 | 1662 | 463706 | 101 | 15 | 14.8515 | |
| hfeng-pmm3 | SNP | * | map_l125_m0_e0 | het | 99.1347 | 99.0682 | 99.2012 | 76.1218 | 12546 | 118 | 12543 | 101 | 9 | 8.9109 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 86.5003 | 83.7811 | 89.4019 | 58.5292 | 842 | 163 | 852 | 101 | 62 | 61.3861 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.5830 | 94.5931 | 94.5728 | 62.5553 | 1732 | 99 | 1760 | 101 | 45 | 44.5545 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.3586 | 98.2333 | 98.4842 | 57.4113 | 6561 | 118 | 6562 | 101 | 80 | 79.2079 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.9626 | 93.3863 | 98.6851 | 30.5076 | 7526 | 533 | 7580 | 101 | 97 | 96.0396 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.9626 | 93.3863 | 98.6851 | 30.5076 | 7526 | 533 | 7580 | 101 | 97 | 96.0396 | |
| asubramanian-gatk | INDEL | * | map_l100_m2_e1 | het | 89.6239 | 84.6778 | 95.1836 | 90.0945 | 1984 | 359 | 1996 | 101 | 13 | 12.8713 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002complexvar | het | 99.3002 | 99.0946 | 99.5066 | 51.3766 | 20577 | 188 | 20368 | 101 | 44 | 43.5644 | |
| qzeng-custom | INDEL | * | map_siren | homalt | 90.9652 | 86.4030 | 96.0361 | 77.3592 | 2294 | 361 | 2447 | 101 | 23 | 22.7723 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 86.6593 | 88.6640 | 84.7432 | 65.8939 | 219 | 28 | 561 | 101 | 76 | 75.2475 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9649 | 98.5390 | 99.3944 | 72.2038 | 16727 | 248 | 16577 | 101 | 58 | 57.4257 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9649 | 98.5390 | 99.3944 | 72.2038 | 16727 | 248 | 16577 | 101 | 58 | 57.4257 | |
| raldana-dualsentieon | INDEL | * | HG002complexvar | het | 98.7829 | 97.8101 | 99.7752 | 56.2974 | 45200 | 1012 | 44831 | 101 | 72 | 71.2871 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 75.0034 | 74.5856 | 75.4258 | 72.2485 | 270 | 92 | 310 | 101 | 98 | 97.0297 | |
| egarrison-hhga | INDEL | I1_5 | HG002complexvar | homalt | 99.1848 | 99.1225 | 99.2472 | 49.0370 | 13330 | 118 | 13315 | 101 | 64 | 63.3663 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 88.6883 | 83.8593 | 94.1074 | 46.2864 | 1621 | 312 | 1613 | 101 | 76 | 75.2475 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 20.1854 | 11.4278 | 86.3881 | 77.1411 | 437 | 3387 | 641 | 101 | 85 | 84.1584 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 89.1252 | 99.3103 | 80.8349 | 77.3820 | 432 | 3 | 426 | 101 | 62 | 61.3861 | |
| gduggal-bwafb | INDEL | I16_PLUS | * | homalt | 86.5142 | 81.1659 | 92.6170 | 34.4514 | 1267 | 294 | 1267 | 101 | 100 | 99.0099 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.2224 | 95.1576 | 99.3788 | 72.1373 | 16153 | 822 | 16158 | 101 | 53 | 52.4752 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.2224 | 95.1576 | 99.3788 | 72.1373 | 16153 | 822 | 16158 | 101 | 53 | 52.4752 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 70.1872 | 69.5761 | 70.8092 | 55.2972 | 279 | 122 | 245 | 101 | 98 | 97.0297 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e1 | * | 94.4490 | 93.5281 | 95.3881 | 87.4419 | 2081 | 144 | 2089 | 101 | 24 | 23.7624 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.3412 | 97.9740 | 96.7165 | 46.4205 | 3385 | 70 | 2975 | 101 | 32 | 31.6832 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 94.4475 | 100.0000 | 89.4792 | 73.5318 | 914 | 0 | 859 | 101 | 1 | 0.9901 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 35.3557 | 26.5193 | 53.0233 | 64.2263 | 96 | 266 | 114 | 101 | 94 | 93.0693 | |
| ciseli-custom | INDEL | * | map_l100_m0_e0 | homalt | 66.3988 | 59.5285 | 75.0617 | 86.5938 | 303 | 206 | 304 | 101 | 79 | 78.2178 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.4668 | 92.7820 | 94.1618 | 66.2439 | 617 | 48 | 1629 | 101 | 95 | 94.0594 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.6283 | 95.0913 | 96.1713 | 57.6972 | 833 | 43 | 2537 | 101 | 95 | 94.0594 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.1720 | 99.7378 | 98.6126 | 26.3903 | 7228 | 19 | 7179 | 101 | 98 | 97.0297 | |
| ckim-gatk | INDEL | * | map_l100_m0_e0 | het | 94.5578 | 98.5309 | 90.8927 | 91.4725 | 1006 | 15 | 1008 | 101 | 5 | 4.9505 | |
| ckim-gatk | INDEL | * | map_l150_m2_e0 | * | 95.7609 | 98.4375 | 93.2260 | 93.1205 | 1386 | 22 | 1390 | 101 | 9 | 8.9109 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.3624 | 95.4205 | 99.3850 | 51.9079 | 15940 | 765 | 16321 | 101 | 99 | 98.0198 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.7995 | 97.9339 | 99.6807 | 49.2515 | 31331 | 661 | 31528 | 101 | 86 | 85.1485 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.3624 | 95.4205 | 99.3850 | 51.9079 | 15940 | 765 | 16321 | 101 | 99 | 98.0198 | |