PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
1051-1100 / 86044 show all
ciseli-customSNP*map_sirenhomalt
93.3935
93.4404
93.3467
52.8475
5153836185121036502749
75.3151
gduggal-snapvardSNP*map_l100_m0_e0het
90.2047
96.4159
84.7453
80.5659
20445760202163639248
6.8151
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
23.7492
32.3709
18.7542
83.9944
7961663840363938
1.0442
ciseli-customSNPtimap_l125_m1_e0*
81.8023
77.7842
86.2580
75.7269
228186517227983632966
26.5969
egarrison-hhgaINDELD1_5HG002compoundhet*
69.0217
68.1406
69.9260
60.9500
83373898841036173521
97.3459
qzeng-customSNPti*het
99.4567
99.1981
99.7166
23.5601
12716181027912696813608520
14.4124
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_diTR_11to50het
88.6622
97.0558
81.6049
51.6846
152964641599736063454
95.7848
gduggal-bwaplatSNP*HG002compoundhet*
88.4972
90.4035
86.6696
48.3543
233442478234453606414
11.4809
ciseli-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
79.9546
88.8056
72.7080
46.5949
92421165959636021710
47.4736
ciseli-customINDELI6_15**
35.4599
24.6948
62.8636
46.3768
613018693609436003400
94.4444
ckim-isaacINDEL*HG002compoundhet*
82.5676
79.0154
86.4543
46.0363
2367362872296435983236
89.9389
ciseli-customSNP*HG002compoundhethomalt
82.3846
93.4613
73.6552
42.1506
10077705100373590971
27.0474
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
62.8790
57.8527
68.8617
41.8554
79755810793735893504
97.6317
mlin-fermikitSNPtimap_sirenhomalt
85.5625
81.8362
89.6443
44.4398
3102968873102535843486
97.2656
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_11to50*
89.0060
88.0657
89.9667
48.3054
3222543673213735843498
97.6004
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
34.5163
33.2073
35.9327
70.3914
20204063200935823513
98.0737
ciseli-customSNPtvmap_sirenhet
84.4100
82.1595
86.7874
65.3031
23505510423489357693
2.6007
jpowers-varprowlSNP**homalt
99.8292
99.9606
99.6981
20.3193
1179696465117982235732211
61.8808
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
74.4014
87.0872
64.9416
71.9724
559182966133570542
15.1821
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
74.4014
87.0872
64.9416
71.9724
559182966133570542
15.1821
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
87.7692
97.8411
79.5775
59.2240
134602971389935673388
94.9818
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
87.7692
97.8411
79.5775
59.2240
134602971389935673388
94.9818
ndellapenna-hhgaINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
93.9899
93.5543
94.4295
71.2140
6027841536036535613233
90.7891
anovak-vgINDELD6_15HG002compoundhet*
33.7576
27.6935
43.2221
33.8439
25016530270735562531
71.1755
eyeh-varpipeINDELD6_15HG002compoundhethomalt
1.5501
83.3333
0.7823
29.2688
2042835513544
99.8029
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
82.8096
94.2598
73.8399
86.2952
10181620100093546141
3.9763
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
56.5143
51.2341
63.0078
48.1760
48784643603335422746
77.5268
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
33.5783
32.0401
35.2715
61.6614
19494134192935403386
95.6497
gduggal-snapvardSNPtiHG002compoundhet*
79.9822
79.9565
80.0079
49.1293
1397435031416335391489
42.0740
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
47.4256
81.8182
33.3900
61.2010
1782396176935293376
95.6645
anovak-vgSNPtvmap_l150_m2_e1*
79.4082
86.0633
73.7085
80.2069
9899160398883527846
23.9864
anovak-vgINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
46.7905
46.8317
46.7493
53.6445
18922148309235222706
76.8313
anovak-vgSNPtvmap_l150_m2_e0*
79.2839
86.0062
73.5363
80.1925
9766158997593512838
23.8610
gduggal-snapvardSNPtimap_siren*
96.3076
96.1556
96.4600
63.8276
964973858955343506409
11.6657
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
49.1300
84.7567
34.5903
59.0099
1846332185335043453
98.5445
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
65.9412
85.6091
53.6220
35.4284
4069684404935023279
93.6322
anovak-vgSNPtvmap_l150_m2_e1het
76.1119
90.7050
65.5638
81.6339
666568366583497823
23.5345
gduggal-snapfbSNP*lowcmp_SimpleRepeat_quadTR_11to50*
90.7849
98.9826
83.8412
55.2905
17998185181033489157
4.4999
anovak-vgSNPtvmap_l150_m2_e0het
75.9484
90.6371
65.3567
81.6125
657367965693482815
23.4061
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_diTR_11to50het
88.8266
96.5799
82.2256
51.6201
152215391610834823306
94.9454
eyeh-varpipeINDELI1_5HG002compoundhet*
54.5656
48.0495
63.1261
63.8199
59376419596134823440
98.7938
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
41.5632
96.5217
26.4836
86.5727
1221441254348167
1.9247
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
76.8075
94.3048
64.7869
87.6558
649139263993478109
3.1340
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
70.9466
66.7041
75.7654
53.5142
1070453431086434753422
98.4748
anovak-vgINDELI6_15*het
35.7228
26.3530
55.4313
44.2246
26447389431234671789
51.6008
ndellapenna-hhgaINDELD1_5HG002compoundhet*
69.2944
67.8709
70.7788
60.8775
83043931838834633380
97.6032
gduggal-bwavardSNP*HG002complexvar*
98.3118
97.1354
99.5171
19.6107
7327752161071218234562272
65.7407
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
29.0460
26.6974
31.8478
58.4515
16244459161534563422
99.0162
gduggal-snapvardSNPtiHG002compoundhethet
77.4625
83.1755
72.4839
53.3720
79051599909634531426
41.2974
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
83.6346
82.9843
84.2953
47.3907
1846437861853434533234
93.6577