PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10901-10950 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | SNP | tv | map_l150_m1_e0 | * | 98.9126 | 98.7903 | 99.0352 | 73.1204 | 10780 | 132 | 10778 | 105 | 61 | 58.0952 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e0 | * | 98.9506 | 98.8287 | 99.0728 | 74.8529 | 11222 | 133 | 11220 | 105 | 61 | 58.0952 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e1 | * | 98.9641 | 98.8437 | 99.0847 | 74.8658 | 11369 | 133 | 11367 | 105 | 61 | 58.0952 | |
| rpoplin-dv42 | SNP | ti | map_l150_m2_e0 | het | 99.0005 | 98.8200 | 99.1816 | 75.9652 | 12729 | 152 | 12725 | 105 | 68 | 64.7619 | |
| rpoplin-dv42 | SNP | ti | map_l125_m0_e0 | * | 98.9475 | 98.7149 | 99.1811 | 72.7585 | 12598 | 164 | 12596 | 104 | 70 | 67.3077 | |
| rpoplin-dv42 | SNP | ti | map_l150_m1_e0 | het | 98.9713 | 98.7874 | 99.1558 | 74.5638 | 12220 | 150 | 12216 | 104 | 67 | 64.4231 | |
| rpoplin-dv42 | SNP | tv | HG002complexvar | * | 99.9096 | 99.8615 | 99.9577 | 21.9240 | 245811 | 341 | 245702 | 104 | 87 | 83.6538 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 90.1333 | 91.3632 | 88.9362 | 70.2437 | 878 | 83 | 836 | 104 | 100 | 96.1538 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e0 | het | 98.9943 | 98.9849 | 99.0036 | 71.3714 | 10336 | 106 | 10334 | 104 | 55 | 52.8846 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e1 | het | 99.0048 | 98.9955 | 99.0141 | 71.4321 | 10447 | 106 | 10445 | 104 | 55 | 52.8846 | |
| gduggal-bwafb | INDEL | D6_15 | HG002complexvar | homalt | 93.8652 | 96.3216 | 91.5309 | 60.1040 | 1126 | 43 | 1124 | 104 | 101 | 97.1154 | |
| eyeh-varpipe | INDEL | D1_5 | map_siren | * | 97.2391 | 97.2230 | 97.2552 | 80.6160 | 3431 | 98 | 3685 | 104 | 64 | 61.5385 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.7954 | 98.2348 | 99.3624 | 57.2660 | 16139 | 290 | 16208 | 104 | 51 | 49.0385 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.2658 | 99.8611 | 92.9204 | 71.7174 | 1438 | 2 | 1365 | 104 | 1 | 0.9615 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e1 | * | 70.7275 | 59.6370 | 86.8852 | 80.8130 | 690 | 467 | 689 | 104 | 91 | 87.5000 | |
| ndellapenna-hhga | INDEL | I1_5 | HG002complexvar | het | 98.8489 | 98.2847 | 99.4197 | 54.6026 | 17877 | 312 | 17818 | 104 | 33 | 31.7308 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.5805 | 96.4115 | 92.8177 | 35.7016 | 403 | 15 | 1344 | 104 | 12 | 11.5385 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.3991 | 99.3730 | 97.4441 | 42.0040 | 3962 | 25 | 3965 | 104 | 97 | 93.2692 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 23.3857 | 16.6667 | 39.1813 | 74.7788 | 69 | 345 | 67 | 104 | 102 | 98.0769 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 89.8707 | 91.9395 | 87.8929 | 91.5916 | 730 | 64 | 755 | 104 | 4 | 3.8462 | |
| jli-custom | SNP | ti | map_l125_m1_e0 | het | 99.1158 | 98.8065 | 99.4270 | 68.8246 | 18048 | 218 | 18046 | 104 | 33 | 31.7308 | |
| jmaeng-gatk | INDEL | * | map_l125_m2_e1 | het | 95.5179 | 98.1534 | 93.0201 | 92.7409 | 1382 | 26 | 1386 | 104 | 7 | 6.7308 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.5033 | 98.1180 | 98.8917 | 42.6441 | 9280 | 178 | 9280 | 104 | 101 | 97.1154 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.5546 | 98.8657 | 96.2777 | 63.5724 | 2702 | 31 | 2690 | 104 | 99 | 95.1923 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.7550 | 98.6561 | 96.8703 | 68.6124 | 3230 | 44 | 3219 | 104 | 99 | 95.1923 | |
| astatham-gatk | SNP | * | HG002complexvar | * | 99.1835 | 98.3938 | 99.9860 | 19.2643 | 742264 | 12117 | 742112 | 104 | 62 | 59.6154 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 73.3333 | 0 | 0 | 0 | 104 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 73.3333 | 0 | 0 | 0 | 104 | 0 | 0.0000 | ||
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.3590 | 97.3698 | 97.3483 | 58.9147 | 3776 | 102 | 3818 | 104 | 49 | 47.1154 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 2.8165 | 1.5003 | 22.9630 | 60.5263 | 29 | 1904 | 31 | 104 | 70 | 67.3077 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 3.8186 | 2.0873 | 22.3881 | 59.7598 | 11 | 516 | 30 | 104 | 70 | 67.3077 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | * | 79.8265 | 97.6608 | 67.5000 | 94.8077 | 167 | 4 | 216 | 104 | 17 | 16.3462 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e0 | het | 96.1330 | 95.6220 | 96.6495 | 82.3053 | 2206 | 101 | 3000 | 104 | 69 | 66.3462 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 76.0643 | 66.6667 | 88.5463 | 95.7295 | 2 | 1 | 804 | 104 | 78 | 75.0000 | |
| dgrover-gatk | SNP | * | map_l250_m1_e0 | het | 98.0059 | 98.1914 | 97.8211 | 91.1588 | 4669 | 86 | 4669 | 104 | 24 | 23.0769 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 75.6523 | 61.3266 | 98.7108 | 36.0827 | 8441 | 5323 | 7963 | 104 | 95 | 91.3462 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.9120 | 98.2491 | 99.5839 | 53.4969 | 24915 | 444 | 24890 | 104 | 67 | 64.4231 | |
| hfeng-pmm1 | SNP | ti | map_l100_m2_e1 | * | 99.5757 | 99.3634 | 99.7889 | 64.0077 | 49170 | 315 | 49163 | 104 | 32 | 30.7692 | |
| hfeng-pmm2 | SNP | tv | map_l100_m0_e0 | het | 98.8749 | 99.1831 | 98.5687 | 74.1359 | 7163 | 59 | 7162 | 104 | 11 | 10.5769 | |
| jlack-gatk | INDEL | I1_5 | HG002complexvar | * | 99.5214 | 99.3556 | 99.6877 | 57.0609 | 33148 | 215 | 33197 | 104 | 72 | 69.2308 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m0_e0 | * | 93.4498 | 98.2619 | 89.0871 | 88.3254 | 848 | 15 | 849 | 104 | 6 | 5.7692 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e0 | * | 92.9788 | 98.6894 | 87.8929 | 91.6415 | 753 | 10 | 755 | 104 | 4 | 3.8462 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 90.3609 | 99.0272 | 83.0894 | 92.4149 | 509 | 5 | 511 | 104 | 4 | 3.8462 | |
| cchapple-custom | INDEL | * | map_l125_m1_e0 | het | 94.5817 | 96.3296 | 92.8962 | 87.3662 | 1286 | 49 | 1360 | 104 | 19 | 18.2692 | |
| ckim-gatk | INDEL | * | HG002complexvar | homalt | 99.7525 | 99.8890 | 99.6164 | 57.3371 | 26997 | 30 | 27010 | 104 | 99 | 95.1923 | |
| ckim-gatk | INDEL | D1_5 | map_siren | * | 98.1530 | 99.2066 | 97.1215 | 84.5697 | 3501 | 28 | 3509 | 104 | 9 | 8.6539 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.1591 | 97.0864 | 89.5372 | 74.7588 | 933 | 28 | 890 | 104 | 94 | 90.3846 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.9081 | 96.5168 | 99.3401 | 63.4667 | 15517 | 560 | 15655 | 104 | 87 | 83.6538 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.9081 | 96.5168 | 99.3401 | 63.4667 | 15517 | 560 | 15655 | 104 | 87 | 83.6538 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 22.9630 | 94.9400 | 0 | 0 | 31 | 104 | 36 | 34.6154 | |