PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10601-10650 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | * | map_l250_m2_e0 | het | 98.1864 | 98.4983 | 97.8764 | 90.6378 | 5116 | 78 | 5116 | 111 | 10 | 9.0090 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7158 | 99.7919 | 99.6397 | 70.7329 | 30697 | 64 | 30697 | 111 | 106 | 95.4955 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e0 | het | 75.0226 | 68.7173 | 82.6019 | 92.3012 | 525 | 239 | 527 | 111 | 23 | 20.7207 | |
| ckim-dragen | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.7746 | 99.8617 | 99.6878 | 62.5042 | 35370 | 49 | 35441 | 111 | 28 | 25.2252 | |
| cchapple-custom | INDEL | * | map_l125_m2_e0 | * | 95.8417 | 96.5847 | 95.1101 | 87.3742 | 2121 | 75 | 2159 | 111 | 23 | 20.7207 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.4083 | 95.5986 | 99.2879 | 34.0400 | 7059 | 325 | 15476 | 111 | 102 | 91.8919 | |
| cchapple-custom | INDEL | D1_5 | map_siren | * | 97.4907 | 98.1298 | 96.8600 | 78.7253 | 3463 | 66 | 3424 | 111 | 14 | 12.6126 | |
| cchapple-custom | SNP | ti | segdup | het | 99.4449 | 99.8088 | 99.0837 | 92.7182 | 12007 | 23 | 12003 | 111 | 5 | 4.5045 | |
| ckim-vqsr | SNP | ti | map_l150_m1_e0 | het | 77.8168 | 64.2603 | 98.6225 | 90.8714 | 7949 | 4421 | 7947 | 111 | 1 | 0.9009 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 86.0678 | 81.0458 | 91.7533 | 79.3558 | 1240 | 290 | 1235 | 111 | 68 | 61.2613 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 86.0678 | 81.0458 | 91.7533 | 79.3558 | 1240 | 290 | 1235 | 111 | 68 | 61.2613 | |
| dgrover-gatk | SNP | * | map_l250_m1_e0 | * | 98.3434 | 98.2276 | 98.4594 | 89.8378 | 7094 | 128 | 7094 | 111 | 29 | 26.1261 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 75.9388 | 61.7232 | 98.6618 | 39.1505 | 8661 | 5371 | 8184 | 111 | 101 | 90.9910 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | * | 91.1702 | 96.9317 | 86.0553 | 90.3175 | 695 | 22 | 685 | 111 | 13 | 11.7117 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | * | 91.6113 | 96.9856 | 86.8014 | 90.8198 | 740 | 23 | 730 | 111 | 13 | 11.7117 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e1 | het | 89.6534 | 98.6590 | 82.1543 | 92.0895 | 515 | 7 | 511 | 111 | 13 | 11.7117 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e1 | het | 80.7395 | 68.0935 | 99.1541 | 88.7617 | 12997 | 6090 | 13011 | 111 | 31 | 27.9279 | |
| eyeh-varpipe | INDEL | D6_15 | HG002compoundhet | hetalt | 46.3719 | 30.5239 | 96.4480 | 28.8641 | 2488 | 5663 | 3014 | 111 | 110 | 99.0991 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 89.5071 | 83.4165 | 96.5571 | 49.6329 | 11705 | 2327 | 3113 | 111 | 109 | 98.1982 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 78.5045 | 69.6510 | 89.9365 | 50.9342 | 918 | 400 | 992 | 111 | 111 | 100.0000 | |
| gduggal-bwafb | SNP | * | HG002compoundhet | homalt | 99.2787 | 99.5826 | 98.9767 | 38.6655 | 10737 | 45 | 10736 | 111 | 91 | 81.9820 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9550 | 99.7815 | 94.2842 | 72.3244 | 1827 | 4 | 1831 | 111 | 5 | 4.5045 | |
| gduggal-bwafb | INDEL | I6_15 | * | hetalt | 81.7221 | 72.8336 | 93.0818 | 54.0993 | 6228 | 2323 | 1480 | 110 | 109 | 99.0909 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 80.0682 | 72.8027 | 88.9447 | 68.9160 | 1756 | 656 | 885 | 110 | 104 | 94.5455 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | het | 89.0608 | 98.7552 | 81.0997 | 91.6235 | 476 | 6 | 472 | 110 | 12 | 10.9091 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | het | 89.5859 | 98.6381 | 82.0555 | 92.0606 | 507 | 7 | 503 | 110 | 12 | 10.9091 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002compoundhet | homalt | 29.0909 | 77.4194 | 17.9104 | 80.8845 | 24 | 7 | 24 | 110 | 96 | 87.2727 | |
| gduggal-bwaplat | SNP | * | map_l100_m0_e0 | het | 76.0794 | 61.7119 | 99.1672 | 89.0304 | 13086 | 8119 | 13098 | 110 | 34 | 30.9091 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e0 | het | 80.5577 | 67.8375 | 99.1492 | 88.7803 | 12805 | 6071 | 12819 | 110 | 31 | 28.1818 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 82.0159 | 72.4008 | 94.5759 | 92.8167 | 1915 | 730 | 1918 | 110 | 13 | 11.8182 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002complexvar | * | 83.1933 | 75.8977 | 92.0405 | 54.5245 | 1247 | 396 | 1272 | 110 | 107 | 97.2727 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.6959 | 90.9221 | 96.6443 | 51.2348 | 3175 | 317 | 3168 | 110 | 81 | 73.6364 | |
| qzeng-custom | INDEL | * | map_l125_m2_e0 | het | 82.3208 | 74.2631 | 92.3398 | 93.0978 | 1033 | 358 | 1326 | 110 | 36 | 32.7273 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9728 | 99.5552 | 98.3972 | 40.4460 | 6714 | 30 | 6753 | 110 | 5 | 4.5455 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 61.8683 | 67.3684 | 57.1984 | 66.9241 | 64 | 31 | 147 | 110 | 43 | 39.0909 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 45.2330 | 51.6779 | 40.2174 | 66.9659 | 77 | 72 | 74 | 110 | 110 | 100.0000 | |
| jpowers-varprowl | INDEL | * | map_l125_m1_e0 | * | 93.0277 | 91.5045 | 94.6026 | 87.5701 | 1928 | 179 | 1928 | 110 | 77 | 70.0000 | |
| jpowers-varprowl | INDEL | D6_15 | HG002complexvar | homalt | 84.3192 | 79.7263 | 89.4737 | 58.7771 | 932 | 237 | 935 | 110 | 93 | 84.5455 | |
| jli-custom | SNP | tv | map_l100_m2_e1 | het | 99.2181 | 99.1279 | 99.3085 | 65.9029 | 15799 | 139 | 15798 | 110 | 24 | 21.8182 | |
| jmaeng-gatk | INDEL | * | map_l125_m2_e0 | * | 96.6195 | 98.1330 | 95.1520 | 91.4584 | 2155 | 41 | 2159 | 110 | 11 | 10.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | HG002compoundhet | * | 94.6939 | 94.1478 | 95.2463 | 35.4713 | 2204 | 137 | 2204 | 110 | 109 | 99.0909 | |
| astatham-gatk | SNP | * | map_l100_m1_e0 | * | 91.9136 | 85.1664 | 99.8219 | 69.0267 | 61663 | 10740 | 61652 | 110 | 52 | 47.2727 | |
| astatham-gatk | SNP | * | map_l100_m2_e0 | * | 91.9897 | 85.2942 | 99.8259 | 70.5601 | 63087 | 10877 | 63076 | 110 | 52 | 47.2727 | |
| astatham-gatk | INDEL | D1_5 | HG002compoundhet | het | 96.0425 | 98.2639 | 93.9193 | 78.7076 | 1698 | 30 | 1699 | 110 | 109 | 99.0909 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.8499 | 98.2717 | 97.4317 | 68.9817 | 3696 | 65 | 4173 | 110 | 107 | 97.2727 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.8499 | 98.2717 | 97.4317 | 68.9817 | 3696 | 65 | 4173 | 110 | 107 | 97.2727 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.0827 | 98.9005 | 93.4211 | 85.4634 | 1799 | 20 | 1562 | 110 | 76 | 69.0909 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.0827 | 98.9005 | 93.4211 | 85.4634 | 1799 | 20 | 1562 | 110 | 76 | 69.0909 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.3454 | 95.7944 | 92.9397 | 77.9289 | 1435 | 63 | 1448 | 110 | 87 | 79.0909 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 74.9014 | 73.1006 | 76.7932 | 54.3353 | 356 | 131 | 364 | 110 | 109 | 99.0909 | |