PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
1001-1050 / 86044 show all
gduggal-snapvardINDELC1_5**
59.8991
90.0000
44.8865
88.9071
9131253837400
10.4248
jlack-gatkSNP*map_l100_m2_e1*
97.0682
99.1343
95.0864
75.5739
74090647740793828292
7.6280
gduggal-snapvardSNP*map_l150_m1_e0*
92.1558
96.2756
88.3741
81.2786
294691140290913827280
7.3164
gduggal-snapvardSNP*map_l150_m2_e0het
89.6113
96.7913
83.4229
84.9670
19487646192543826259
6.7695
anovak-vgINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
65.3950
71.2167
60.4531
49.7479
39861611584438232953
77.2430
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
57.9782
64.4869
52.6629
39.1789
24951374425238223071
80.3506
jlack-gatkSNP*map_l100_m2_e0*
97.0473
99.1293
95.0510
75.5620
73320644733093817291
7.6238
gduggal-snapfbINDELD1_5*het
96.7358
97.4935
95.9898
56.7536
853792195913423816775
20.3092
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
81.6587
97.5693
70.2096
85.8214
89112228977380926
0.6826
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
81.6587
97.5693
70.2096
85.8214
89112228977380926
0.6826
gduggal-snapfbINDEL*HG002compoundhethomalt
22.9146
84.6939
13.2497
72.0594
58110558138043669
96.4511
mlin-fermikitINDEL**homalt
97.5803
98.1713
96.9963
56.8203
122883228912277438023715
97.7117
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
86.0688
96.6376
77.5838
51.2369
121004211315238003663
96.3947
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
63.9682
59.1207
69.6815
44.3739
87416044872937983701
97.4460
gduggal-snapvardSNP*map_l150_m1_e0het
89.3113
96.7385
82.9433
83.9813
18686630184643797256
6.7422
jlack-gatkSNP*map_l100_m2_e1het
95.7463
99.2772
92.4580
79.7064
46559339465483797267
7.0319
gduggal-bwafbSNPtv*het
99.6077
99.8543
99.3624
27.5297
5908428625909313792213
5.6171
gduggal-snapfbSNPtilowcmp_SimpleRepeat_diTR_11to50*
71.1247
96.9196
56.1741
75.2924
468814948543787159
4.1986
jlack-gatkSNP*map_l100_m2_e0het
95.7132
99.2694
92.4029
79.6895
46060339460493786266
7.0259
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.9649
79.7856
88.6063
45.8996
2552564672937337772366
62.6423
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
71.6357
72.7045
70.5979
41.7864
75302827906937773029
80.1959
gduggal-snapvardINDELC1_5*het
54.5455
100.0000
37.5000
88.8932
9022653775369
9.7748
eyeh-varpipeINDELD6_15HG002compoundhet*
39.7758
35.3560
45.4585
32.6471
31935838313837653754
99.7078
jlack-gatkSNP*map_l100_m1_e0*
97.0238
99.1147
95.0193
74.0812
71762641717513761290
7.7107
eyeh-varpipeINDELD6_15*homalt
70.9562
87.6541
59.6022
44.0635
5545781554337573655
97.2851
gduggal-snapplatINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
29.4305
22.6149
42.1263
81.2487
22787795273437561082
28.8072
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
63.1837
91.9278
48.1333
41.9722
3462304348137513650
97.3074
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
63.1837
91.9278
48.1333
41.9722
3462304348137513650
97.3074
eyeh-varpipeINDEL*HG002complexvar*
93.6611
92.3263
95.0350
54.2841
7103459047176037493600
96.0256
gduggal-snapplatINDELD1_5*homalt
88.9829
85.3881
92.8936
64.0746
4177771494900637492039
54.3878
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
86.9809
86.1182
87.8610
55.6334
2704843602713537493406
90.8509
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
86.9809
86.1182
87.8610
55.6334
2704843602713537493406
90.8509
gduggal-snapplatINDELD1_5HG002complexvar*
83.2560
78.3158
88.8615
63.4989
256217094298853746907
24.2125
gduggal-snapfbINDEL*HG002compoundhethet
71.1390
60.5520
86.2126
38.8614
247916152340537431778
47.5020
ciseli-customSNPtimap_l125_m2_e1*
82.1337
78.2100
86.4719
77.2907
239086661238873737990
26.4918
gduggal-snapplatINDELI1_5HG002complexvarhet
73.7898
70.2842
77.6634
67.6709
127845405129763732123
3.2958
jlack-gatkSNP*map_l100_m1_e0het
95.6776
99.2570
92.3473
78.4943
45022337450113730265
7.1046
ciseli-customSNP*lowcmp_SimpleRepeat_diTR_11to50het
73.8977
92.7678
61.4068
68.2562
578545159193720112
3.0108
ciseli-customSNPtimap_l125_m2_e0*
82.0578
78.1149
86.4200
77.2839
236366622236163711984
26.5158
gduggal-snapplatSNPtvHG002complexvarhet
96.9038
96.2928
97.5225
28.0304
14514655881455273697526
14.2278
egarrison-hhgaINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
93.9659
93.6956
94.2379
71.6964
6036940626044736963375
91.3149
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
75.9168
99.5247
61.3615
46.7806
565427586836953649
98.7551
gduggal-snapplatINDELD1_5HG002compoundhethet
31.7181
49.3634
23.3658
68.0565
853875112636931755
47.5223
gduggal-snapplatSNPtiHG002compoundhethet
78.6871
89.5844
70.1534
57.2786
851599086453678282
7.6672
gduggal-snapvardSNP*map_l100_m0_e0*
92.6283
96.0476
89.4441
77.2407
315431298311483676276
7.5082
eyeh-varpipeINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
51.5543
84.6990
37.0542
41.5748
1871338216136713393
92.4271
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
42.6981
81.4626
28.9311
78.7122
14373271494367076
2.0708
egarrison-hhgaINDELD1_5*het
97.6225
99.3251
95.9773
54.9367
869835918741836643399
92.7675
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
73.8882
99.6873
58.6974
39.9145
510116520036593622
98.9888
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
92.2240
99.4840
85.9515
72.5594
217861132236236553631
99.3434