PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10401-10450 / 86044 show all | |||||||||||||||
| jli-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.7232 | 99.8605 | 99.5863 | 54.2148 | 27920 | 39 | 27921 | 116 | 9 | 7.7586 | |
| jli-custom | SNP | tv | map_l100_m2_e0 | * | 99.4221 | 99.3089 | 99.5355 | 64.2177 | 24860 | 173 | 24859 | 116 | 30 | 25.8621 | |
| ltrigg-rtg1 | SNP | tv | HG002complexvar | het | 99.7971 | 99.6716 | 99.9230 | 21.1569 | 150239 | 495 | 150457 | 116 | 36 | 31.0345 | |
| jmaeng-gatk | SNP | * | map_l250_m1_e0 | het | 72.0683 | 57.7077 | 95.9441 | 96.8258 | 2744 | 2011 | 2744 | 116 | 8 | 6.8966 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e1 | het | 98.6349 | 98.8432 | 98.4275 | 78.2306 | 7263 | 85 | 7261 | 116 | 1 | 0.8621 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 83.7423 | 78.1955 | 90.1361 | 42.6621 | 1040 | 290 | 1060 | 116 | 85 | 73.2759 | |
| asubramanian-gatk | INDEL | * | map_siren | het | 91.9143 | 87.2227 | 97.1393 | 86.6717 | 3932 | 576 | 3939 | 116 | 14 | 12.0690 | |
| gduggal-snapfb | INDEL | I6_15 | HG002complexvar | homalt | 74.1849 | 64.7446 | 86.8481 | 42.3529 | 786 | 428 | 766 | 116 | 108 | 93.1034 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.9496 | 78.1237 | 98.0235 | 54.2271 | 5746 | 1609 | 5753 | 116 | 13 | 11.2069 | |
| gduggal-snapplat | SNP | * | map_l250_m0_e0 | * | 83.7909 | 76.0187 | 93.3333 | 96.5523 | 1623 | 512 | 1624 | 116 | 43 | 37.0690 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 69.4193 | 63.9344 | 75.9336 | 65.0725 | 312 | 176 | 366 | 116 | 104 | 89.6552 | |
| dgrover-gatk | SNP | * | map_l250_m2_e0 | * | 98.4387 | 98.3513 | 98.5262 | 90.2982 | 7755 | 130 | 7755 | 116 | 30 | 25.8621 | |
| dgrover-gatk | SNP | ti | map_l125_m0_e0 | het | 98.8408 | 99.0802 | 98.6026 | 80.1354 | 8187 | 76 | 8185 | 116 | 25 | 21.5517 | |
| dgrover-gatk | SNP | tv | map_l150_m1_e0 | * | 99.0155 | 99.0927 | 98.9384 | 77.4338 | 10813 | 99 | 10811 | 116 | 24 | 20.6897 | |
| egarrison-hhga | INDEL | * | map_siren | het | 97.9497 | 98.4472 | 97.4573 | 81.1814 | 4438 | 70 | 4446 | 116 | 54 | 46.5517 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 64.8218 | 55.9541 | 77.0297 | 55.2305 | 390 | 307 | 389 | 116 | 108 | 93.1034 | |
| hfeng-pmm1 | SNP | * | map_l125_m2_e0 | het | 99.2641 | 98.9290 | 99.6016 | 71.5339 | 29004 | 314 | 28998 | 116 | 29 | 25.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.1973 | 98.5845 | 99.8177 | 71.4580 | 63519 | 912 | 63531 | 116 | 89 | 76.7241 | |
| hfeng-pmm3 | SNP | ti | map_l100_m2_e1 | * | 99.6774 | 99.5898 | 99.7651 | 64.5884 | 49282 | 203 | 49275 | 116 | 21 | 18.1034 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.6832 | 96.0089 | 99.4168 | 42.4933 | 19774 | 822 | 19775 | 116 | 110 | 94.8276 | |
| hfeng-pmm2 | SNP | tv | map_l100_m0_e0 | * | 99.1581 | 99.3594 | 98.9576 | 71.7097 | 11013 | 71 | 11012 | 116 | 15 | 12.9310 | |
| ckim-dragen | INDEL | D16_PLUS | * | het | 97.5880 | 99.0820 | 96.1385 | 80.1270 | 3130 | 29 | 2888 | 116 | 38 | 32.7586 | |
| ckim-gatk | SNP | * | map_l250_m1_e0 | * | 69.0461 | 53.5724 | 97.0891 | 96.1568 | 3869 | 3353 | 3869 | 116 | 9 | 7.7586 | |
| ckim-gatk | SNP | * | map_l250_m1_e0 | het | 72.2025 | 57.8759 | 95.9554 | 96.7153 | 2752 | 2003 | 2752 | 116 | 9 | 7.7586 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 91.0211 | 84.5394 | 98.5791 | 36.6641 | 8049 | 1472 | 8048 | 116 | 98 | 84.4828 | |
| cchapple-custom | INDEL | D16_PLUS | HG002compoundhet | het | 95.2281 | 95.0617 | 95.3950 | 30.7967 | 385 | 20 | 2403 | 116 | 113 | 97.4138 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 62.0432 | 53.7002 | 73.4554 | 68.7187 | 283 | 244 | 321 | 116 | 109 | 93.9655 | |
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.6177 | 99.6495 | 99.5860 | 52.1198 | 27861 | 98 | 27903 | 116 | 33 | 28.4483 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 23.6842 | 94.8614 | 0 | 0 | 36 | 116 | 40 | 34.4828 | |
| ckim-dragen | SNP | tv | map_l150_m0_e0 | * | 97.7354 | 98.2271 | 97.2486 | 82.2976 | 4100 | 74 | 4100 | 116 | 14 | 12.0690 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.4041 | 98.6072 | 75.3191 | 48.5214 | 354 | 5 | 354 | 116 | 115 | 99.1379 | |
| ckim-gatk | INDEL | * | map_l125_m1_e0 | * | 96.6080 | 98.5287 | 94.7608 | 90.7066 | 2076 | 31 | 2080 | 115 | 11 | 9.5652 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.1046 | 97.0494 | 97.1598 | 70.1203 | 3947 | 120 | 3934 | 115 | 99 | 86.0870 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.0854 | 93.2480 | 96.9966 | 62.0553 | 3715 | 269 | 3714 | 115 | 105 | 91.3043 | |
| ckim-gatk | SNP | ti | map_l150_m0_e0 | * | 72.8820 | 58.1733 | 97.5459 | 92.0553 | 4573 | 3288 | 4571 | 115 | 19 | 16.5217 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.8007 | 99.6434 | 96.0249 | 44.6210 | 2794 | 10 | 2778 | 115 | 115 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m1_e0 | homalt | 83.5566 | 85.6419 | 81.5705 | 83.0803 | 507 | 85 | 509 | 115 | 98 | 85.2174 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 81.1856 | 91.0405 | 73.2558 | 68.6589 | 315 | 31 | 315 | 115 | 55 | 47.8261 | |
| asubramanian-gatk | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 71.4286 | 0.0000 | 70.5128 | 5 | 2 | 0 | 115 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.6463 | 98.4049 | 98.8889 | 50.5045 | 10241 | 166 | 10235 | 115 | 88 | 76.5217 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.5072 | 98.6072 | 75.4797 | 48.5181 | 354 | 5 | 354 | 115 | 114 | 99.1304 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.6756 | 98.7256 | 98.6257 | 64.1796 | 8289 | 107 | 8253 | 115 | 108 | 93.9130 | |
| jmaeng-gatk | SNP | ti | func_cds | * | 99.5302 | 99.8912 | 99.1718 | 29.3312 | 13772 | 15 | 13770 | 115 | 1 | 0.8696 | |
| jmaeng-gatk | SNP | ti | func_cds | het | 99.2988 | 99.9412 | 98.6647 | 33.9419 | 8499 | 5 | 8497 | 115 | 1 | 0.8696 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4919 | 99.8244 | 97.1944 | 47.1301 | 3980 | 7 | 3984 | 115 | 58 | 50.4348 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.8579 | 98.3570 | 99.3639 | 41.8770 | 17959 | 300 | 17963 | 115 | 109 | 94.7826 | |
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.0957 | 93.3062 | 96.9553 | 51.5459 | 3666 | 263 | 3662 | 115 | 107 | 93.0435 | |
| jmaeng-gatk | INDEL | * | HG002complexvar | het | 99.5676 | 99.3876 | 99.7482 | 58.0104 | 45929 | 283 | 45560 | 115 | 73 | 63.4783 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 94.6355 | 97.3799 | 92.0415 | 69.2422 | 1338 | 36 | 1330 | 115 | 100 | 86.9565 | |
| gduggal-bwavard | SNP | ti | segdup | het | 98.3107 | 97.6060 | 99.0256 | 94.1945 | 11742 | 288 | 11687 | 115 | 13 | 11.3043 | |