PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
10301-10350 / 86044 show all
gduggal-snapvardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
0.2898
0.1456
32.5714
65.9533
16865711847
39.8305
gduggal-snapvardINDELI1_5map_l150_m2_e1het
87.4676
98.7382
78.5064
92.5981
313443111843
36.4407
ndellapenna-hhgaINDELI6_15HG002compoundhethet
71.9355
85.0962
62.3003
78.5616
1773119511877
65.2542
mlin-fermikitINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
61.1726
50.2392
78.1885
71.6457
420416423118117
99.1525
mlin-fermikitSNP*HG002compoundhethet
92.5921
86.9234
99.0518
44.4618
1232418541232711822
18.6441
mlin-fermikitSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
96.5257
96.6749
96.3770
70.3153
3140108313911863
53.3898
jmaeng-gatkINDEL*HG002complexvarhomalt
99.7212
99.8779
99.5650
57.3567
269943327007118111
94.0678
jmaeng-gatkINDELD16_PLUS*het
97.5431
99.0503
96.0810
78.7734
312930289311885
72.0339
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
87.3841
93.4028
82.0941
65.3887
53838541118116
98.3051
jlack-gatkINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.5666
98.2288
91.1677
82.1653
133124121811865
55.0847
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
36.7347
85.7143
23.3766
97.5877
366361181
0.8475
hfeng-pmm3SNP*map_l100_m0_e0het
99.3509
99.2596
99.4424
70.0348
210481572104411811
9.3220
hfeng-pmm1SNP*map_l125_m0_e0*
99.1962
99.0044
99.3888
74.3664
191921931918911833
27.9661
asubramanian-gatkINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
0.0000
0.0000
76.2575
0001180
0.0000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
31.2083
26.2195
38.5417
39.6226
431217411898
83.0508
ckim-vqsrSNPtimap_l150_m2_e0het
78.3377
64.9794
98.6095
91.3777
8370451183681182
1.6949
dgrover-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.6403
99.3747
97.9167
72.3397
5562355546118106
89.8305
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
83.2650
74.7927
93.9018
56.7791
1804608181711862
52.5424
ckim-isaacSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
94.1078
92.3077
95.9796
65.5314
278423228171187
5.9322
dgrover-gatkSNPtvmap_l150_m2_e0*
99.0452
99.1281
98.9624
78.7121
11256991125411824
20.3390
dgrover-gatkSNPtvmap_l150_m2_e1*
99.0574
99.1393
98.9756
78.7166
11403991140111824
20.3390
ckim-vqsrINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6856
99.9087
99.4636
76.0319
218792021879118117
99.1525
ckim-vqsrSNP*HG002complexvar*
98.7826
97.6098
99.9840
19.7255
7363501803173620111858
49.1525
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
76.9409
66.2700
91.7077
66.5255
1281652130511898
83.0508
egarrison-hhgaSNP*map_l100_m2_e0*
99.5430
99.2483
99.8395
64.7214
734085567340911850
42.3729
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
69.9207
56.4189
91.9178
94.1495
13361032134211826
22.0339
gduggal-snapfbINDEL*map_l100_m1_e0het
93.1246
91.6331
94.6655
81.5482
2048187209411821
17.7966
gduggal-bwavardINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
65.3542
82.1429
54.2636
73.2919
1383014011884
71.1864
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
95.7737
95.3383
96.2131
64.2456
1268622998118110
93.2203
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
58.3686
63.6364
53.9062
70.1284
1337613811836
30.5085
ciseli-customINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
72.6669
63.6190
84.7150
61.4963
66838265411877
65.2542
ckim-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6970
99.9315
99.4637
76.0277
218841521884118117
99.1525
ckim-gatkINDELI16_PLUS**
97.3609
96.6128
98.1207
70.7109
6161216616111883
70.3390
rpoplin-dv42SNPti*homalt
99.9800
99.9747
99.9853
16.8487
802835203802832118106
89.8305
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
81.8346
80.5442
83.1669
54.9775
592143583118117
99.1525
rpoplin-dv42SNPtvmap_l125_m1_e0*
99.1341
99.0072
99.2613
68.8884
158571591585511869
58.4746
rpoplin-dv42INDELI1_5HG002complexvar*
99.3509
99.0558
99.6477
56.5141
3304831533091117105
89.7436
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.1088
95.8830
98.3664
54.5270
70803047045117113
96.5812
raldana-dualsentieonSNPtisegdup*
99.6041
99.8055
99.4035
89.2386
1949938194971174
3.4188
raldana-dualsentieonSNPtvmap_l150_m2_e0*
99.0273
99.0841
98.9706
75.8842
11251104112491173
2.5641
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
68.7241
97.0414
53.2000
69.5122
1645133117117
100.0000
asubramanian-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
94.9172
93.4909
96.3878
56.5468
22551573122117109
93.1624
asubramanian-gatkSNP*map_sirenhet
78.4554
64.6317
99.8014
73.5808
58809321825880011733
28.2051
asubramanian-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2429
98.9091
99.5790
55.5792
276543052767411713
11.1111
anovak-vgSNP*func_cdshet
98.2393
97.5540
98.9342
34.7247
108882731086111770
59.8291
anovak-vgSNP*segduphomalt
98.7938
98.6875
98.9004
87.8317
1060214110523117108
92.3077
bgallagher-sentieonINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.3899
99.9450
96.8825
62.1062
363623636117115
98.2906
jpowers-varprowlINDEL*map_l125_m2_e1*
92.9861
91.4607
94.5632
88.4195
2035190203511781
69.2308
jli-customSNPtimap_l125_m2_e0*
99.3639
99.1176
99.6114
68.7298
299912672998911741
35.0427
jli-customSNPtimap_l125_m2_e1*
99.3704
99.1266
99.6153
68.7864
303022673030011741
35.0427