PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
10251-10300 / 86044 show all
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.4707
98.0557
98.8892
80.4368
105912101059411952
43.6975
egarrison-hhgaSNP*map_l100_m2_e1*
99.5464
99.2547
99.8398
64.7282
741805577418111950
42.0168
ckim-isaacINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
80.9438
72.3670
91.8269
61.8148
1333509133711966
55.4622
ckim-isaacINDELI6_15HG002compoundhethomalt
15.7021
38.7097
9.8485
69.8630
121913119118
99.1597
ckim-vqsrSNPtimap_l150_m2_e0*
66.8194
50.4631
98.8632
91.2397
1035110161103491193
2.5210
ltrigg-rtg2SNP*map_l100_m1_e0het
98.8659
98.0136
99.7330
50.5607
44458901444561198
6.7227
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
84.4015
97.2145
74.5726
47.8842
34910349119117
98.3193
ndellapenna-hhgaSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2284
98.8877
99.5715
51.9423
276483112765511975
63.0252
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
90.5470
96.0437
85.6454
67.9552
7042971011913
10.9244
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
96.4272
98.7275
94.2317
67.6240
186224194411918
15.1261
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
53.5743
43.1856
70.5446
64.5614
263346285119105
88.2353
cchapple-customSNPtvmap_l250_m1_e0*
95.5601
95.6177
95.5026
89.6633
2531116252711924
20.1681
cchapple-customSNPtvmap_l250_m1_e0het
94.4921
95.5232
93.4830
91.0657
170780170711924
20.1681
ciseli-customINDEL*map_l150_m0_e0*
63.1351
56.8093
71.0462
94.9719
29222229211960
50.4202
ckim-gatkINDEL*map_l125_m2_e0*
96.6334
98.5428
94.7967
91.3207
216432216811911
9.2437
ckim-gatkINDEL*map_l125_m2_e1*
96.6536
98.5169
94.8596
91.3812
219233219611911
9.2437
cchapple-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
98.9964
98.5399
99.4571
53.2701
1957229021802119100
84.0336
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.9533
99.6209
96.3407
45.9172
3153123133119118
99.1597
raldana-dualsentieonSNPtimap_l150_m0_e0het
97.9052
98.1362
97.6753
80.7049
50029550001191
0.8403
rpoplin-dv42SNPtvmap_l125_m2_e0*
99.1468
99.0175
99.2763
70.8786
163271621632511970
58.8235
rpoplin-dv42SNPtvmap_l125_m2_e1*
99.1554
99.0274
99.2837
70.9387
164951621649311970
58.8235
rpoplin-dv42SNPtimap_l125_m1_e0het
99.1441
98.9434
99.3457
70.2153
180731931806911974
62.1849
rpoplin-dv42SNPtimap_l125_m2_e0het
99.1665
98.9669
99.3669
71.7774
186811951867711974
62.1849
rpoplin-dv42SNPtimap_l125_m2_e1het
99.1705
98.9679
99.3738
71.8144
188901971888611974
62.1849
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
81.7039
73.7672
91.5543
53.9843
21997821290119114
95.7983
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
51.7828
35.4521
96.0081
54.3492
241543972862119117
98.3193
eyeh-varpipeINDELI16_PLUSHG002compoundhethet
2.3810
4.2553
1.6529
50.2058
2452119119
100.0000
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
31.0297
20.4204
64.5833
56.8123
136530217119119
100.0000
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
50.5670
63.6364
41.9512
31.6667
14886119118
99.1597
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
31.0297
20.4204
64.5833
56.8123
136530217119119
100.0000
eyeh-varpipeINDELI1_5map_siren*
96.0860
95.6406
96.5357
78.7530
2874131331611992
77.3109
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
35.1538
58.3333
25.1572
36.4000
141040119113
94.9580
eyeh-varpipeSNP*map_l250_m1_e0*
98.8785
99.4323
98.3308
90.1611
718141701011912
10.0840
eyeh-varpipeSNP*map_l250_m2_e0het
98.5164
99.3647
97.6826
91.1394
51613350161198
6.7227
gduggal-bwafbINDEL*map_siren*
96.8227
95.3306
98.3622
80.8381
7064346714711950
42.0168
gduggal-bwafbINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
84.5240
82.7851
86.3375
67.9071
755157752119119
100.0000
gduggal-bwavardINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
47.7477
40.9794
57.1942
72.9835
15922915911985
71.4286
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
66.9905
53.7415
88.9096
95.4327
94881695411918
15.1261
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
83.3451
73.4925
96.2484
91.4731
30471099305311921
17.6471
ghariani-varprowlINDELD6_15HG002complexvarhomalt
83.9832
79.7263
88.7204
58.7246
93223793611992
77.3109
ghariani-varprowlINDELI6_15HG002complexvarhomalt
84.4108
80.1483
89.1522
51.9071
97324197811999
83.1933
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
29.0805
20.8955
47.8070
73.7629
112424109119119
100.0000
gduggal-snapplatINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
56.3564
39.9149
95.8304
60.8880
271940932735119102
85.7143
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
52.7132
36.3814
95.6522
52.4661
261045642618119102
85.7143
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
55.0640
44.6809
71.7340
85.7770
25231230211938
31.9328
gduggal-snapplatINDELD1_5segdup*
87.1437
84.2248
90.2721
96.4637
929174109511818
15.2542
ghariani-varprowlINDEL*map_l125_m0_e0*
91.1268
94.8980
87.6440
95.1166
8374583711830
25.4237
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
92.8275
99.6183
86.9034
74.4470
78337831183
2.5424
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
68.7500
83.7563
58.3039
53.7582
16532165118105
88.9831
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
72.4442
68.0556
77.4379
54.5217
392184405118115
97.4576