PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10201-10250 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 91.9318 | 98.4353 | 86.2344 | 39.0430 | 692 | 11 | 758 | 121 | 116 | 95.8678 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.0535 | 96.5032 | 97.6101 | 85.2011 | 4940 | 179 | 4942 | 121 | 84 | 69.4215 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.4024 | 92.4861 | 94.3370 | 90.4803 | 1994 | 162 | 1999 | 120 | 81 | 67.5000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 79.6299 | 72.3065 | 88.6040 | 54.8263 | 953 | 365 | 933 | 120 | 112 | 93.3333 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.5688 | 99.2675 | 97.8799 | 72.6755 | 5556 | 41 | 5540 | 120 | 110 | 91.6667 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 91.6601 | 95.7237 | 87.9276 | 63.3075 | 873 | 39 | 874 | 120 | 63 | 52.5000 | |
| mlin-fermikit | SNP | tv | map_l100_m1_e0 | het | 69.7650 | 53.9859 | 98.5774 | 56.8653 | 8323 | 7094 | 8315 | 120 | 2 | 1.6667 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2934 | 98.0494 | 98.5385 | 48.6812 | 6585 | 131 | 8091 | 120 | 75 | 62.5000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.6648 | 97.6879 | 93.7238 | 36.7934 | 1690 | 40 | 1792 | 120 | 21 | 17.5000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3353 | 99.0372 | 99.6352 | 71.5761 | 32916 | 320 | 32773 | 120 | 43 | 35.8333 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 89.4819 | 91.2377 | 87.7925 | 91.7885 | 833 | 80 | 863 | 120 | 5 | 4.1667 | |
| jmaeng-gatk | SNP | ti | map_l150_m0_e0 | * | 72.7820 | 58.0842 | 97.4381 | 92.2027 | 4566 | 3295 | 4564 | 120 | 17 | 14.1667 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.6175 | 96.0100 | 99.2797 | 41.3870 | 8061 | 335 | 16539 | 120 | 106 | 88.3333 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m2_e1 | homalt | 83.7687 | 85.9677 | 81.6794 | 83.9066 | 533 | 87 | 535 | 120 | 103 | 85.8333 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.7166 | 95.9906 | 95.4442 | 52.1613 | 2442 | 102 | 2514 | 120 | 52 | 43.3333 | |
| anovak-vg | INDEL | * | map_l250_m1_e0 | * | 66.8127 | 69.1803 | 64.6018 | 96.2450 | 211 | 94 | 219 | 120 | 61 | 50.8333 | |
| asubramanian-gatk | SNP | * | map_siren | * | 76.4845 | 61.9738 | 99.8677 | 70.7590 | 90623 | 55605 | 90605 | 120 | 35 | 29.1667 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 84.3374 | 74.7117 | 96.8102 | 79.6075 | 3628 | 1228 | 3642 | 120 | 34 | 28.3333 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m0_e0 | het | 89.9509 | 98.4772 | 82.7834 | 89.5125 | 582 | 9 | 577 | 120 | 17 | 14.1667 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 90.1456 | 99.3056 | 82.5328 | 68.5151 | 572 | 4 | 567 | 120 | 100 | 83.3333 | |
| gduggal-bwavard | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.9002 | 95.4637 | 88.5932 | 82.0967 | 947 | 45 | 932 | 120 | 15 | 12.5000 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e0 | het | 93.1137 | 91.5475 | 94.7345 | 82.7714 | 2112 | 195 | 2159 | 120 | 22 | 18.3333 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 63.4640 | 52.6659 | 79.8319 | 50.6633 | 1857 | 1669 | 475 | 120 | 116 | 96.6667 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 3.2258 | 100.0000 | 1.6393 | 75.6487 | 2 | 0 | 2 | 120 | 2 | 1.6667 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e1 | * | 90.5545 | 95.5013 | 86.0950 | 91.3170 | 743 | 35 | 743 | 120 | 22 | 18.3333 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 51.3343 | 37.8608 | 79.6954 | 89.2663 | 446 | 732 | 471 | 120 | 38 | 31.6667 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m0_e0 | het | 88.7467 | 97.8528 | 81.1912 | 89.9796 | 319 | 7 | 518 | 120 | 44 | 36.6667 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 63.4640 | 52.6659 | 79.8319 | 50.6633 | 1857 | 1669 | 475 | 120 | 116 | 96.6667 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 55.2239 | 100.0000 | 38.1443 | 82.3636 | 1 | 0 | 74 | 120 | 20 | 16.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.0812 | 94.2669 | 93.8962 | 73.0279 | 1858 | 113 | 1846 | 120 | 112 | 93.3333 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.0812 | 94.2669 | 93.8962 | 73.0279 | 1858 | 113 | 1846 | 120 | 112 | 93.3333 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e1 | * | 99.0225 | 99.0871 | 98.9579 | 75.9025 | 11397 | 105 | 11395 | 120 | 3 | 2.5000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.2145 | 93.1450 | 95.3088 | 77.7623 | 2473 | 182 | 2438 | 120 | 91 | 75.8333 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 80.3090 | 93.6464 | 70.2970 | 75.8518 | 339 | 23 | 284 | 120 | 119 | 99.1667 | |
| jlack-gatk | INDEL | D6_15 | HG002complexvar | * | 97.2520 | 96.7937 | 97.7147 | 58.0825 | 5132 | 170 | 5131 | 120 | 96 | 80.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | * | * | 97.4049 | 96.6244 | 98.1982 | 67.4168 | 6555 | 229 | 6540 | 120 | 70 | 58.3333 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.7098 | 95.5696 | 97.8776 | 67.1394 | 5587 | 259 | 5534 | 120 | 110 | 91.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.7098 | 95.5696 | 97.8776 | 67.1394 | 5587 | 259 | 5534 | 120 | 110 | 91.6667 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.1705 | 99.5602 | 96.8190 | 57.4112 | 3622 | 16 | 3622 | 119 | 117 | 98.3193 | |
| hfeng-pmm2 | SNP | tv | map_l150_m1_e0 | * | 99.1035 | 99.2944 | 98.9134 | 76.5808 | 10835 | 77 | 10833 | 119 | 14 | 11.7647 | |
| anovak-vg | INDEL | I1_5 | map_l125_m1_e0 | het | 49.2776 | 39.9177 | 64.3713 | 91.2405 | 194 | 292 | 215 | 119 | 14 | 11.7647 | |
| bgallagher-sentieon | SNP | tv | map_l125_m0_e0 | het | 98.2208 | 99.1138 | 97.3437 | 79.3814 | 4362 | 39 | 4361 | 119 | 15 | 12.6050 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.7413 | 99.0926 | 98.3925 | 58.6124 | 7317 | 67 | 7284 | 119 | 115 | 96.6387 | |
| asubramanian-gatk | INDEL | D16_PLUS | HG002compoundhet | * | 94.4206 | 93.9769 | 94.8685 | 35.6370 | 2200 | 141 | 2200 | 119 | 109 | 91.5966 | |
| jmaeng-gatk | SNP | ti | map_l150_m0_e0 | het | 76.1038 | 62.8605 | 96.4167 | 93.5560 | 3204 | 1893 | 3202 | 119 | 16 | 13.4454 | |
| ltrigg-rtg1 | INDEL | D6_15 | * | * | 98.2810 | 97.0642 | 99.5288 | 47.5098 | 25326 | 766 | 25133 | 119 | 76 | 63.8655 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.3672 | 99.4179 | 97.3384 | 59.4908 | 4270 | 25 | 4352 | 119 | 1 | 0.8403 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5366 | 99.3299 | 95.8069 | 62.8145 | 2668 | 18 | 2719 | 119 | 1 | 0.8403 | |
| jli-custom | SNP | * | map_l125_m0_e0 | het | 98.5516 | 98.0575 | 99.0508 | 71.6081 | 12418 | 246 | 12418 | 119 | 39 | 32.7731 | |
| ckim-isaac | SNP | * | map_siren | het | 87.0731 | 77.2065 | 99.8309 | 53.7836 | 70251 | 20740 | 70263 | 119 | 18 | 15.1261 | |