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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
10151-10200 / 86044 show all
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.8871
99.2258
98.5507
63.9239
8331658296122109
89.3443
astatham-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.5692
99.3032
97.8460
72.1465
5558395542122111
90.9836
anovak-vgINDELI1_5map_l125_m2_e1het
49.1777
39.7638
64.4315
91.9559
20230622112215
12.2951
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
95.3387
95.0659
95.6131
74.9211
2524131265912256
45.9016
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.0691
97.8061
98.3336
59.4584
7222162719912298
80.3279
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
92.9624
97.8970
88.5014
84.9075
931209391221
0.8197
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
66.0791
54.5455
83.7981
68.9868
52844063112264
52.4590
ckim-vqsrSNPtimap_l150_m2_e1*
66.9029
50.5622
98.8488
91.2579
1047810245104761223
2.4590
ckim-isaacINDELD16_PLUSHG002complexvarhet
76.6298
73.5321
80.0000
57.0120
81429348812228
22.9508
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
89.5152
98.0903
82.3188
67.4835
56511568122117
95.9016
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
75.1306
62.9044
93.2559
77.8634
1672986168712215
12.2951
gduggal-snapplatINDELI6_15HG002compoundhethetalt
53.1182
36.6874
96.2041
33.7320
31325405309212297
79.5082
gduggal-snapvardINDELI1_5map_l150_m2_e1*
89.7320
94.9153
85.0856
90.9633
5042769612245
36.8852
ghariani-varprowlSNP*func_cdshet
99.3937
99.8746
98.9174
34.8349
1114714111471222
1.6393
gduggal-snapfbSNP*map_l250_m0_e0*
93.7882
93.3489
94.2317
93.9033
1993142199312243
35.2459
cchapple-customSNPtisegdup*
99.6040
99.8311
99.3779
91.2552
19504331949012216
13.1148
ckim-dragenINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
96.7279
96.7327
96.7231
79.7872
3908132360112295
77.8689
ckim-dragenINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.4189
94.5959
94.2426
73.7195
20131151997122101
82.7869
cchapple-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
84.4118
79.2549
90.2866
33.4746
9362451134122120
98.3607
ckim-dragenSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.8169
99.8526
99.7812
60.4097
55549825563112239
31.9672
ciseli-customINDELD1_5map_l150_m1_e0*
74.0933
68.7587
80.3252
92.6268
49322449412155
45.4545
ciseli-customINDELI16_PLUSHG002complexvar*
21.4346
13.1398
58.1315
77.3688
172113716812193
76.8595
cchapple-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
93.9285
91.4672
96.5260
44.7581
879823362121110
90.9091
anovak-vgINDELI1_5map_l125_m2_e0het
49.5663
40.2414
64.5161
91.8362
20029722012115
12.3967
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
95.5233
95.1335
95.9163
58.0490
2815144284212162
51.2397
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
64.1521
78.2895
54.3396
87.4882
1193314412138
31.4050
ltrigg-rtg1SNPtvsegduphet
98.5379
99.3380
97.7505
88.6829
52523552581211
0.8264
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
84.4765
97.7716
74.3644
48.9730
3518351121119
98.3471
jpowers-varprowlSNP*func_cdshet
99.1057
99.2922
98.9199
32.1729
1108279110821212
1.6529
jpowers-varprowlSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
96.8385
97.6127
96.0765
79.7850
29447229631214
3.3058
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.3219
95.4262
99.2945
64.0832
170048151703012144
36.3636
gduggal-snapfbINDEL*map_l100_m2_e1het
92.9455
91.2079
94.7505
82.9512
2137206218412122
18.1818
gduggal-bwavardINDELD1_5map_l100_m0_e0*
91.4210
96.1761
87.1140
87.8478
8303381812118
14.8760
gduggal-bwafbINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
88.7546
84.9330
92.9364
52.1776
15222701592121119
98.3471
qzeng-customINDELC16_PLUS*homalt
0.0000
0.0000
4.7244
81.1852
0061210
0.0000
ndellapenna-hhgaINDELD6_15HG002complexvarhomalt
93.9581
97.7759
90.4272
60.3886
114326114312172
59.5041
mlin-fermikitINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
82.8241
83.7838
81.8862
84.4940
558108547121110
90.9091
mlin-fermikitINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
82.8241
83.7838
81.8862
84.4940
558108547121110
90.9091
qzeng-customSNPtilowcmp_SimpleRepeat_diTR_11to50*
98.0837
98.5942
97.5785
75.0150
476968487612142
34.7107
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
96.4691
95.1249
97.8519
68.0089
55612855512121112
92.5620
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.4691
95.1249
97.8519
68.0089
55612855512121112
92.5620
hfeng-pmm2SNPtvmap_l150_m2_e0*
99.1297
99.3219
98.9383
77.9235
11278771127612114
11.5702
hfeng-pmm2SNPtvmap_l150_m2_e1*
99.1408
99.3306
98.9518
77.9286
11425771142312114
11.5702
jlack-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
89.9543
98.1728
83.0056
50.9979
59111591121120
99.1736
gduggal-snapvardINDELI1_5map_l150_m2_e0*
89.7214
94.9904
85.0062
90.8896
4932668612144
36.3636
ghariani-varprowlSNPtvlowcmp_SimpleRepeat_triTR_11to50het
96.5299
98.5500
94.5910
50.5417
21073121161211
0.8264
eyeh-varpipeINDEL*map_l100_m2_e0homalt
95.0097
96.1935
93.8547
84.5593
1213481848121108
89.2562
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
83.6123
74.0570
95.9987
49.9006
28861011290312183
68.5950
ckim-vqsrSNP*segdup*
98.8099
98.0689
99.5622
93.7251
275255422751912112
9.9174
ckim-vqsrSNPtimap_l150_m2_e1het
78.3815
65.0480
98.5906
91.4083
8466454984641212
1.6529